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Pull requests list

Fix SpatialDimplot(..., interactive = TRUE) to support all SpatialImage types
#9691 opened Feb 18, 2025 by dcollins15 • Draft updated Feb 18, 2025
Fix PercentageFeatureSet to respect the assay parameter
#9686 opened Feb 14, 2025 by dcollins15 • Draft updated Feb 14, 2025
chore: update preprocessing.R
#9674 opened Feb 9, 2025 by eltociear Loading… updated Feb 9, 2025
Raster.dpi vlnplot
#9665 opened Feb 4, 2025 by samuel-marsh Loading… updated Feb 5, 2025
1
feature: updates for cellranger 9.0
#9541 opened Dec 10, 2024 by stephenwilliams22 Loading… updated Dec 18, 2024
30
Fix DimPlot convenience function logic (#9436)
#9493 opened Nov 18, 2024 by rharao Loading… updated Dec 13, 2024
Add uwot.approx_pow option to RunUMAP for better reproducibility
#9449 opened Nov 1, 2024 by daskelly Loading… updated Nov 1, 2024
Fix ggplot2 deprecation warning in DotPlot()
#9409 opened Oct 18, 2024 by Billsfriend Loading… updated Oct 18, 2024
Added the functionality of scale.factor in NormalizeData being set to "median" of counts
#9389 opened Oct 11, 2024 by pranavm2109 Loading… updated Oct 11, 2024
Fixed min.cells.group issue in FindConservedMarkers()
#8910 opened May 17, 2024 by hamelyz Loading… updated May 25, 2024
Add Option to Plot Percentage of Variance Explained in ElbowPlot Func…
#8929 opened May 24, 2024 by moi-taiga Loading… updated May 24, 2024
1
Fix: UpdateSymbolList incorrectly renames genes
#8179 opened Dec 12, 2023 by samuel-marsh Loading… updated May 22, 2024
5
Sketch Data Improvement
#8913 opened May 18, 2024 by Sandman-1 Loading… updated May 18, 2024
Fix PercentageFeatureSet
#8659 opened Mar 20, 2024 by maxim-h Loading… updated Mar 21, 2024
3
Fix corner case issue in BlendExpression
#8486 opened Feb 16, 2024 by egeulgen Loading… updated Feb 16, 2024
Support to handle .parquet output from Vizgen
#7190 opened Apr 19, 2023 by alikhuseynov Loading… updated Feb 15, 2024
43
proportional sketching
#7444 opened Jun 13, 2023 by inofechm Loading… updated Jan 12, 2024
1
Update umi.assay in GetResidual
#8203 opened Dec 19, 2023 by aladyeva-research Loading… updated Dec 19, 2023
3
Adding rworkflows
#7751 opened Sep 1, 2023 by bschilder Loading… updated Nov 28, 2023
Support for integrating large datasets
#6567 opened Oct 17, 2022 by zhanghao-njmu Loading… updated Nov 28, 2023
Add ReadDragen to support Illumina Dragen output
#6070 opened Jun 13, 2022 by parvsachdeva Loading… updated Nov 28, 2023
1
Update integration_introduction.Rmd
#5398 opened Dec 16, 2021 by simonmfr Loading… updated Nov 28, 2023
3
enable PCA on data to exploit sparseness
#2333 opened Nov 18, 2019 by jan-glx Loading… updated Nov 28, 2023
Deprecate weight.by.var
#2331 opened Nov 17, 2019 by jan-glx Loading… updated Nov 28, 2023
Fix weight.by.var for approx=FALSE
#2330 opened Nov 17, 2019 by jan-glx Loading… updated Nov 28, 2023
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