Advanced Normalization Tools (ANTs)

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Neuroimaging analysis and visualization suite

ITK-SNAP medical image segmentation tool

Python Wrapper for MeshFix: easily repair holes in surface meshes

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and appar…

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are host…

Converts EyeLink 1000 Edf files into a MATLAB structure - eye edf

dHCP structural pipeline

Surface version of the M-CRIB atlases.