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predict.sh
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predict.sh
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#!/usr/bin/env bash
EXP_DIR="/vol/fob-wbia-vol1/wbi/gardasam/data/belb-dr/belbert"
python predict.py test=ncbi_disease.test.disease exp_dir="$EXP_DIR" run_id=ncbi_disease
# python predict.py test=bc5cdr.test.disease exp_dir="$EXP_DIR" run_id=bc5cdr_disease
# python predict.py test=bc5cdr.test.chemical exp_dir="$EXP_DIR" run_id=bc5cdr_chemical
# python predict.py test=nlm_chem.test.chemical exp_dir="$EXP_DIR" run_id=nlm_chem
# python predict.py test=bioid.test.cell_line exp_dir="$EXP_DIR" run_id=nlm_chem
# python predict.py test=gnormplus.test.gene exp_dir="$EXP_DIR" run_id=gnormplus kb_subset=gnormplus
# python predict.py test=nlm_gene.test.gene exp_dir="$EXP_DIR" run_id=nlm_gene kb_subset=nlm_gene
# python predict.py test=s800.test.species exp_dir="$EXP_DIR" run_id=s800
# python predict.py test=linnaeus.test.species exp_dir="$EXP_DIR" run_id=linnaeus
# python predict.py test=medmentions.test.umls exp_dir="$EXP_DIR" run_id=medmentions
#