- Fixed a bug in
kcount
that was preventing the deconstruction of alignments prior to kmer counting. Thanks to Prof. Gianluigi Cardinali for the bug report
- Specified previous version of set.seed sampler with RNGversion() calls
- Added "central", "centroid" and "farthest" options for OTU clustering
- Increased sequence hashing speed
- Edits made to vignette to improve clarity
- Enforced a maximum kmer size of 12 for DNA to avoid overflow
-
Resolved bug in kcount where sequence disambiguation was prevented by sapply failing to simplify NULL values.
-
Enabled users to manually control compression of amino acid sequences in kcount via new 'compress' argument. Thanks to Thomas Shafee for suggestion.
- Fixed bug in otu that prevented additional arguments being passed to nested functions via "dots".
- Sumbitted to CRAN 2018-03-05.