An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

The next version of bwa-mem

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

SortMeRNA: next-generation sequence filtering and alignment tool

Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species

✏️ Genome assembly polishing & SNV detection

Error correction for Illumina RNA-seq reads

SambaR: Snp datA Management and Basic Analyses in R

Detecting natural selection from population-based genetic data

Modification of BayesAss 3.0.4 to allow handling of large SNP datasets