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Address a potential problem while creating a training dataset with dense array inputs #78

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Address a potential problem while creating a training dataset with dense array inputs #78

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b281c89
Update data_utils.py part 1
HelloWorldLTY Jul 10, 2024
c29f4f3
Update pertdata.py part 2
HelloWorldLTY Jul 10, 2024
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Update pertdata.py part 2
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@HelloWorldLTY
HelloWorldLTY authored Jul 10, 2024
commit c29f4f3f944038c23b74b2b15bfa6693fd676b30
9 changes: 7 additions & 2 deletions gears/pertdata.py
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Original file line number Diff line number Diff line change
Expand Up @@ -594,8 +594,13 @@ def create_cell_graph_dataset(self, split_adata, pert_category,
# Create cell graphs
cell_graphs = []
for X, y in zip(Xs, ys):
cell_graphs.append(self.create_cell_graph(X.toarray(),
y.toarray(), de_idx, pert_category, pert_idx))
try:
cell_graphs.append(self.create_cell_graph(X.toarray(),
y, de_idx, pert_category, pert_idx))
except:
y = y.toarray()
cell_graphs.append(self.create_cell_graph(X.toarray(),
y, de_idx, pert_category, pert_idx))

return cell_graphs

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