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ggcoverage 0.9.0

Major changes

  • Supporting gtf file from Ensembl

Minor changes

  • Fixed bugs in getting gene group.

ggcoverage 0.8.1

Minor changes

  • Fixed bugs in ggcoverage.

ggcoverage 0.8.0

Major changes

  • Changed the plot type of coverage when visualizing at single-nucleotide level (geom_bar instead of geom_rect)
  • Changed the plot type of amino acids (geom_rect instead of geom_tile)
  • Changed x axis range
  • Added GetPlotData to obtain raw plot data
  • Added a new vignette to customize the plot

Minor changes

  • Fixed bugs in geom_base.

ggcoverage 0.7.2

New features

  • Added GetConsensusPeak to get consensus peak from replicates with MSPC.

Minor changes

  • Added peak.df for geom_peak to support dataframe as input.

ggcoverage 0.7.0

New features

  • Added geom_base to annotate genome coverage with base and amino acids.

Minor changes

  • LoadTrackFile supported visualization at single-nucleotide level.
  • Added rect.color for geom_coverage to control rect border color.
  • Fixed bug in track file format identification.

ggcoverage 0.6.0

New features

  • Added geom_gc to annotate genome coverage with GC content.

ggcoverage 0.5.0

Minor changes

  • Fixed bug in getIdeogram.

ggcoverage 0.4.0

New features

  • Added geom_peak to enhance its usage in ChIP-seq or ATAC-seq data.
  • Changed Y axis theme.

ggcoverage 0.3.0

New features

  • Added geom_transcript, geom_ideogram.

Minor changes

  • Fixed bug in GetGeneGroup.

ggcoverage 0.2.0

New features

  • Added geom_gene, geom_ideogram.

ggcoverage 0.1.0

New features

  • Added a NEWS.md file to track changes to the package.
  • Added ggcoverage, geom_coverage, LoadTrack and FormatInput.