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Issues list

critical typo in kmeans.py (simport instead of import)
#122 opened Apr 2, 2023 by jkosinski
1
feature request: only search within a list of potential peptides
#40 opened Jun 28, 2022 by avilella
2
partial hallucination with multiple chains
#71 opened Sep 5, 2022 by mouung
2
pLDDT increases and then decreases during the soft iterations
#85 opened Sep 24, 2022 by victorconan
8
Out of memory error
#93 opened Oct 24, 2022 by bethleegy
4
out of memory for partial hallucination
#98 opened Nov 16, 2022 by 17dacheng
2
Fix sequence at certain positions in Binder protocol
#107 opened Dec 3, 2022 by aminsagar
8
How to use gpu or cuda for design binder
#109 opened Dec 6, 2022 by cloudaner115
1
git clone error
#112 opened Feb 9, 2023 by biotech70
2
small fix required for newer numpy versions
#115 opened Mar 2, 2023 by gieses
OOM on AF DB proteins?
#116 opened Mar 8, 2023 by Abhishaike
2
how to interpret results of 'use_templates=True' versus 'False' in partial_hallucination_rewire?
#119 opened Mar 16, 2023 by genya
1
Early stopping
#4 opened Apr 1, 2022 by phiweger
3
Minimize sequence length while preserving some amount of structural stability.
#120 opened Mar 24, 2023 by seyonechithrananda
Can we see generated sequences other than final one?
#123 opened Apr 19, 2023 by Hyunjoo-ibs
1
How to predict the Cyclic Peptide's structure by a given sequence
#125 opened Apr 22, 2023 by aar-d-vark
3
Using RFdiffusion to design a binder, with some parts of the binder fixed
#131 opened Apr 27, 2023 by KoubaPetr
6
where is the output file when finish the model.design_3stage() run?
#135 opened Apr 29, 2023 by zzy221127
1
atom index in af.prep.prep_pdb
#139 opened May 10, 2023 by data2code
1
Any plans to add af2seq to the colab design
#140 opened May 11, 2023 by Lyang556
MPNN designed sequence not separated correctly with multiple targets and multiple binders
#141 opened May 13, 2023 by data2code
2
Patch fix_partial_contigs when residue numbering in PDB has a gap
#142 opened May 15, 2023 by data2code
2
Allow to select the Complex_beta_ckpt model in RFdiffusion colab?
#143 opened May 23, 2023 by remybonnav
Translate colab for RFdiffusion to a jupyter notebook?
#144 opened May 23, 2023 by remybonnav
Size limit protein target in AfDesign
#189 opened Jan 16, 2025 by biostructaq25
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