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21 stars written in Jupyter Notebook
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A game theoretic approach to explain the output of any machine learning model.

Jupyter Notebook 23,904 3,364 Updated May 22, 2025

🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained

Jupyter Notebook 23,470 4,086 Updated Nov 12, 2024

tensorflow2中文教程,持续更新(当前版本:tensorflow2.0),tag: tensorflow 2.0 tutorials

Jupyter Notebook 7,824 2,041 Updated Dec 9, 2020

links to conference publications in graph-based deep learning

Jupyter Notebook 4,920 779 Updated May 22, 2025

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

Jupyter Notebook 1,091 195 Updated Apr 18, 2025

Graph Networks as a Universal Machine Learning Framework for Molecules and Crystals

Jupyter Notebook 533 154 Updated Apr 27, 2023

bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.

Jupyter Notebook 446 67 Updated Oct 27, 2024

Original implementation of the paper "SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery" by Shion Honda et al.

Jupyter Notebook 337 62 Updated Dec 22, 2022

Repository for MolFormer

Jupyter Notebook 309 50 Updated May 8, 2025

Tutorials to learn how to work with the RDKit

Jupyter Notebook 285 77 Updated Mar 19, 2023

A modular, easy to extend GFlowNet library

Jupyter Notebook 266 44 Updated May 20, 2025

rdkit总结与实践

Jupyter Notebook 229 94 Updated Jul 12, 2020
Jupyter Notebook 182 60 Updated Mar 21, 2023

Code for the tutorial/review paper for RL-based-fine-tuniing. In this code, we especially focus on the design of biological sequences like DNA (enhancers) and RNA (UTRs) design.

Jupyter Notebook 133 6 Updated Sep 15, 2024

t-sne visualization of mnist images when feature is represented by raw pixels and cnn learned feature

Jupyter Notebook 64 15 Updated Mar 24, 2018

使用DGL和pytorch实现metapath2vec

Jupyter Notebook 50 9 Updated Sep 17, 2021

Code of our IJCAI2021 paper: "Learning Attributed Graph Representation with Communicative Message Passing Transformer"

Jupyter Notebook 40 6 Updated Mar 19, 2022
Jupyter Notebook 22 5 Updated Mar 27, 2024

code for Zagidullin et al 2021 "Comparative analysis of molecular fingerprints in prediction of drug combination effects"

Jupyter Notebook 16 9 Updated Aug 1, 2022

Compilation of models created to learn + generate molecular structures.

Jupyter Notebook 6 5 Updated Aug 24, 2020

Molecular Fingerprinting using Convolutional Neural Networks

Jupyter Notebook 2 Updated Feb 6, 2019