Aurorabili
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🧬Biological
The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and design synthetic RBS sequences to rationally control the translat…
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Short Read Sequence Typing for Bacterial Pathogens
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
Structural variation and indel detection by local assembly
✂️ ⚡ Rapid haploid variant calling and core genome alignment
IQ-TREE software version 2: phylogenetics by maximum likelihood
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
HTML5 scrollable genome browser
A visualization grammar and GPU-accelerated toolkit for genomic data
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A Whole Genome Alignment Visualization Tool for the Web
A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
Phylogenetic orthology inference for comparative genomics
Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
Open source code for AlphaFold 2.
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.