Oxford Nanopore Technologies fast5 API software

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

Chai-1, SOTA model for biomolecular structure prediction

Make Zotero effective for us LaTeX holdouts

Oxford Nanopore's Basecaller

Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http://bit.ly/cheap-proteins

Training models for basecalling Oxford Nanopore reads

Trying to train LoRAs for ESM-2

Official Implemetation of DPLM (ICML'24) - Diffusion Language Models Are Versatile Protein Learners

p-IgGen: A Generative Paired Antibody Language Model

Official repository for discrete Walk-Jump Sampling (dWJS)

Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.

Python library to handle Gene Ontology (GO) terms

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

GENA-LM is a transformer masked language model trained on human DNA sequence.

Protein structure diffusion model for unconditional protein generation and motif scaffolding

Improved antibody structure-based design using inverse folding

Code for NeurIPS 2023 paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Interactions"

Aligning protein generative models with experimental fitness

✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)

Code for running RFdiffusion

Biological foundation modeling from molecular to genome scale

Deep networks for protein functional inference

AbLang: A language model for antibodies