ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization

a versatile and flexible pipeline for analysing different variants of ChIA-PET data

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

A set of pipelines for Hi-C and ChIP-Seq analysis.

A collection of tools for Hi-C data analysis

ChIA-PET Utilities

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

an efficient Hi-C data processing pipeline