Alignment of spatial genomics data using deep Gaussian processes

ClusterMap for multi-scale clustering analysis of spatial gene expression

StarDist - Object Detection with Star-convex Shapes

Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)

ifpd2: a Python3.7+ package to build iFISH probes

iFISH Probe Design: a Python3 package to build iFISH probes.

Spatial Single Cell Analysis in Python

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Simple oligo analysis and primer design