run_test.sh

#!/bin/bash

# 1 read out folder

LOCAL_COMPUTE=false
DEBUG=false
CLUSTER='x-men'
TESTRUN='net-test'

while getopts "l" opt; do
    case $opt in
    l) LOCAL_COMPUTE=true ;;
    \?) echo "error: option -$OPTARG is not implemented"; exit ;;
    esac
done

# combine getopts with positional parameters, see
# https://stackoverflow.com/questions/11742996

TESTDIR_FULL=${@:$OPTIND:1}
TESTDIR=$(basename $TESTDIR_FULL)

CODEDIR=$(pwd);

# use timestamp + TESTDIR as working dir name
WDIR=$(date +"%y%m%d_%H%M%S")"_"$TESTDIR;


# 2 copy to location with appropriate file name

mkdir -p ../tests/testing/$WDIR

if [[ -d ../analysis-dev/ ]]
then
    echo "Note: analysis-dev/ directory found." 
    echo "Replacing analysis/ with analysis-dev/ in output folder."

    rsync -a --exclude='*~' --exclude='analysis/' \
	  $CODEDIR/ ../tests/testing/$WDIR/src/

    rsync -a --delete --exclude='*~' --exclude='__pycache__' \
	  $CODEDIR/../analysis-dev/ ../tests/testing/$WDIR/src/analysis

else
    echo "Note: analysis-dev/ directory not found." 
    echo "Proceeding without replacment."

    rsync -a --exclude='*~' \
	  $CODEDIR/ ../tests/testing/$WDIR/src/
fi


cd ../tests/testing/$WDIR


# 3 read out simulation set up (cores, memory etc...)

source "./src/"$TESTDIR_FULL"simulation.config"

# echo $NPARSIM
# echo $NCORES
# echo $MEMGB


# 4 replace explored_params

cp "./src/"$TESTDIR_FULL"explored_params.py" ./src/net/


# 5 start simulation through run_local with settings from 3)

rm -f nohup.out

nohup ./src/run_local.sh $WDIR $CODEDIR $NPARSIM \
                          $NCORES $MEMGB $LOCAL_COMPUTE \
                          $CLUSTER $TESTRUN $TESTDIR_FULL &