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10 stars written in C++
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An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

C++ 1,984 335 Updated Nov 28, 2024

A fast and sensitive gapped read aligner

C++ 688 161 Updated Dec 12, 2024

Oxford Nanopore's Basecaller

C++ 571 68 Updated Dec 17, 2024

Transcript assembly and quantification for RNA-Seq

C++ 399 78 Updated Jan 7, 2025

Genome browser and variant annotation

C++ 289 8 Updated Jan 17, 2025

SortMeRNA: next-generation sequence filtering and alignment tool

C++ 250 67 Updated Jan 1, 2025
C++ 236 54 Updated Nov 19, 2024

BigWig and BAM utilities

C++ 92 9 Updated Mar 26, 2024

Unified graphics device

C++ 23 3 Updated Jul 8, 2024

fast and comprehensive k-mer counting package

C++ 18 1 Updated Sep 27, 2021