issues Search Results · repo:tanaylab/metacell language:R
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intanaylab/metacell (press backspace or delete to remove)Can you remove RSvgDevice from metacell requirements?
(amosbase8) -bash-4.2$ Rscript scripts/pl/generate_flows.R
Loading required package: usethis
ℹ Loading metacell
Error in load_imports(path) :
The ...
yonatans2
- Opened on Sep 30, 2024
- #94
The picture creatred with mcell_mc2d_plot alwalys have spot outside the ax。
Ray569743422
- 1
- Opened on Mar 4, 2024
- #92
An error occurred in the process of Building the balanced cell graph while conducting the analysis along the metacell
tutorial. (https://tanaylab.github.io/metacell/articles/a-basic_pbmc8k.html#selecting-feature-genes) ...
JHyang0210
- Opened on Feb 28, 2024
- #91
Recently I found that the function mcell_add_cgraph_from_mat_bknn() of your package metacell is continue dying and has
no respound at all to any other inputs. After a short test, it seems that due to the ...
TimelikeTachyon
- 1
- Opened on Feb 26, 2024
- #90
Got an error when running the usage guide page of metacell:
https://tanaylab.github.io/metacell/articles/a-basic_pbmc8k.html
mcell_import_scmat_10x( test , base_dir= http://www.wisdom.weizmann.ac.il/~atanay/metac_data/pbmc_8k/ ...
- 2
- Opened on Feb 22, 2024
- #89
I can run the metacell pipeline well, but there are a lot of metacells have no similarity, I could not understand this
result, do you have any suggesstions ? metacell.raw.pdf
yigerenbenpao
- Opened on Jan 31, 2024
- #88
In the mcell_mc_hierachy function you are using (around line 108 of mc_hierarchy.r)
while (j != -1 cells[j] mincells) {
I got the following error message:
Error in while (j != -1 cells[j] mincells) ...
baj12
- 1
- Opened on Mar 5, 2023
- #84
Hi there, I would like to ask if the calculation of dysfunctional and activation scores is related to the usage of your
package?
I wonder if you can share the code step by step for the calculation of ...
abedkurdi
- Opened on Jan 19, 2023
- #83
When scdb_init( testdb/ , force_reinit=T) is executed, only the phrase initializing scdb to testdb/ appears and scdb is
not installed. And after running options(timeout = 1e9), When I run mcell_import_scmat_10x( ...
Jungkooklove0901
- Opened on Dec 13, 2022
- #82
Hello,
Thank you for the amazing tool!
How does meta cell avoid batch effect? How do I input my list of high-variable genes robust against batch effect in the
python version?
Sayyam-Shah
- Opened on Oct 14, 2022
- #80
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