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Commits on May 7, 2018

• Compute reading frames from coding start/end for BED files with exons, UTRs, and strand

  jrobinso

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• Use phase information for gff3 & gtf files

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  jrobinso

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• Add .idea to git-ignore

  jrobinso

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• Fix bugs in interpretation of reading frame

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  jrobinso

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Commits on Apr 20, 2018

• Merge pull request igvteam#536 from igvteam/intellij_gradle_fixes

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  jrobinso

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• Merge pull request igvteam#535 from Weeks-UNC/master

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  jrobinso

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• Intellij metadata changes for build/run with Gradle

  davideby

  committed
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Commits on Apr 19, 2018

• Reimplement BasePairTrack features lost around 2.4.0

  

  shapemapper

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Commits on Apr 13, 2018

• Update IDE artfiacts for Gradle build

  jrobinso

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• Remove duplicate SAM_RELOAD_KEYS list

  jrobinso

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Commits on Apr 10, 2018

• Merge pull request igvteam#531 from igvteam/java8_check

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  jrobinso

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• Added a version check for Java 8.

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  davideby

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Commits on Apr 3, 2018

• Merge pull request igvteam#528 from igvteam/gradle_build

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  jrobinso

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• Merge branch 'master' into gradle_build

  davideby

  committed
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• Minor fix to the signed JAR's manifest

  davideby

  committed
  125a338

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• oauth updates

  jrobinso

  committed
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• Allow setting max data range to zero (vs 1E-45). Fixes igvteam#517

  jrobinso

  committed
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• Cleaning up Gradle build

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  davideby

  committed
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• Added missing gradle-wrapper.jar

  davideby

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Commits on Mar 31, 2018

• Merge pull request igvteam#525 from amwenger/amw-tolerate-invalid-SA-tag

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  jrobinso

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Commits on Mar 30, 2018

• Be robust to invalid SA entries

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  amwenger

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Commits on Mar 29, 2018

• Modifies gradle script to update timestamp for release builds

  davideby

  committed
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• Moving netbeans *.form resources back to Java src tree

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  davideby

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• Modifies Gradle build to insert dynamic build properties

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  davideby

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Commits on Mar 28, 2018

• Capturing some missing web resources.

  davideby

  committed
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Commits on Mar 27, 2018

• Minor fixes to the gradle build & shrink script

  davideby

  committed
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Commits on Mar 26, 2018

• Gradle build updates, fixing unit tests

  davideby

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Commits on Mar 23, 2018

• Re-org of project files for gradle conventions

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  davideby

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• Gradle build work-in progress

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Commits on Mar 20, 2018

• Merge pull request igvteam#518 from yasushi-saito/cgireader

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  jrobinso

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• Multi-locus bam file bug. Fixes igvteam#520

  jrobinso

  committed
  df1de3e

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• Hide don't dispose splice junction tracks

  jrobinso

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Commits on Mar 16, 2018

• Change CGIAlignmentReader.hasIndex to return true.

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  Yaz Saito

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Commits on Mar 4, 2018

• Fix "is proper pair" test

  jrobinso

  committed
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• Auto-correct bam<->genome name mismatches using chromosome size as the key.

  jrobinso

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