From be78d552a7bfe5ac5a8b74715caa9b216dddeb9f Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Tue, 26 Nov 2024 12:13:38 +0000 Subject: [PATCH] [status] 2024-11-26 12:13:38 UTC --- README.md | 90 ++++++------- index.html | 365 ++++++++++++++++++++++++++--------------------------- repos.csv | 161 ++++++++++------------- 3 files changed, 291 insertions(+), 325 deletions(-) diff --git a/README.md b/README.md index 497e74b..9071150 100644 --- a/README.md +++ b/README.md @@ -2,64 +2,61 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-11-25 12:11:21 UTC +2024-11-26 12:11:19 UTC -| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | -|:----------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 784 | 19 | 73 | 189 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 61 | 103 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 61 | 103 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 351 | 8 | 20 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12000909080) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12000999270) | 82248b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 351 | 8 | 20 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | -| [theislab/scib](https://github.com/theislab/scib) | 311 | 14 | 42 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033984) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033925) | acfde7 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 235 | 5 | 49 | 19 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11996024643) | d3d6d3 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 235 | 5 | 49 | 19 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 151 | 5 | 12 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/11957705536) | 5381a5 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 129 | 7 | 13 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/11901588594) | adcf11 | -| [theislab/moscot](https://github.com/theislab/moscot) | 116 | 3 | 45 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | -| [theislab/moscot](https://github.com/theislab/moscot) | 116 | 3 | 45 | 9 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12000921752) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12000851268) | ed4824 | -| [theislab/ncem](https://github.com/theislab/ncem) | 103 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | -| [theislab/spapros](https://github.com/theislab/spapros) | 28 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703702) [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703692) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703696) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703698) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12001565155) | 1ec08e | -| [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/multimil](https://github.com/theislab/multimil) | 19 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932729) | c721ba | -| [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | -| [theislab/DRVI](https://github.com/theislab/DRVI) | 13 | 1 | 1 | 1 | [![](https://github.com/theislab/DRVI/workflows/Check%20Build/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11956494135) [![](https://github.com/theislab/DRVI/workflows/Test/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11956494133) | fdc2eb | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11901586701) | edc340 | -| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 8 | 1 | 1 | 1 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 6 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12000959225) | 210765 | -| [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 19 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/11976257798) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/11976257806) | 5be55f | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12009589491) | 2b8310 | -| [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11850585189) | 5fc4ad | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | +| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | +|:----------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 785 | 19 | 73 | 189 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 62 | 103 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 62 | 103 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 351 | 8 | 20 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12000909080) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12000999270) | 82248b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 351 | 8 | 20 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | +| [theislab/scib](https://github.com/theislab/scib) | 311 | 14 | 42 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033984) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033925) | acfde7 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 235 | 5 | 48 | 19 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934461) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934460) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934463) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934462) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934474) | 67fedb | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 235 | 5 | 48 | 19 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 151 | 5 | 12 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/11957705536) | 5381a5 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | +| [theislab/moscot](https://github.com/theislab/moscot) | 116 | 3 | 43 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | +| [theislab/moscot](https://github.com/theislab/moscot) | 116 | 3 | 43 | 9 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12027237589) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/12027237595) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12027237587) | 4080a9 | +| [theislab/ncem](https://github.com/theislab/ncem) | 103 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | +| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | +| [theislab/spapros](https://github.com/theislab/spapros) | 29 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703702) [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703692) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703696) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703698) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12022061841) | 1ec08e | +| [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | +| [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | +| [theislab/multimil](https://github.com/theislab/multimil) | 19 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932729) | c721ba | +| [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | +| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 8 | 1 | 1 | 1 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 6 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12000959225) | 210765 | +| [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | +| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12030146977) | 7dad97 | +| [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11850585189) | 5fc4ad | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | ## Repos without Github Actions | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1400 | 30 | 21 | 463 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1402 | 30 | 21 | 463 | | [theislab/scarches](https://github.com/theislab/scarches) | 335 | 12 | 53 | 51 | -| [theislab/scgen](https://github.com/theislab/scgen) | 268 | 9 | 28 | 56 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 264 | 13 | 32 | 29 | -| [theislab/dca](https://github.com/theislab/dca) | 247 | 11 | 32 | 72 | -| [theislab/paga](https://github.com/theislab/paga) | 208 | 10 | 24 | 33 | +| [theislab/scgen](https://github.com/theislab/scgen) | 269 | 9 | 28 | 56 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 266 | 13 | 33 | 29 | +| [theislab/dca](https://github.com/theislab/dca) | 249 | 11 | 32 | 72 | +| [theislab/paga](https://github.com/theislab/paga) | 209 | 10 | 24 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 193 | 7 | 108 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 154 | 8 | 9 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 150 | 9 | 8 | 24 | -| [theislab/sc-pert](https://github.com/theislab/sc-pert) | 143 | 5 | 6 | 13 | +| [theislab/sc-pert](https://github.com/theislab/sc-pert) | 144 | 5 | 6 | 13 | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 129 | 7 | 14 | 16 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 104 | 5 | 11 | 24 | | [theislab/cpa](https://github.com/theislab/cpa) | 88 | 5 | 21 | 17 | | [theislab/destiny](https://github.com/theislab/destiny) | 77 | 5 | 31 | 11 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 66 | 7 | 16 | 28 | | [theislab/nicheformer](https://github.com/theislab/nicheformer) | 65 | 4 | 14 | 2 | -| [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 56 | 6 | 6 | 8 | +| [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 57 | 6 | 6 | 8 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 55 | 6 | 4 | 13 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 55 | 6 | 3 | 12 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 50 | 9 | 0 | 27 | @@ -81,13 +78,15 @@ GitHub Dashboard | [theislab/campa](https://github.com/theislab/campa) | 14 | 4 | 6 | 4 | | [theislab/cellrank_reproducibility](https://github.com/theislab/cellrank_reproducibility) | 14 | 2 | 1 | 8 | | [theislab/DeepCollisionalCrossSection](https://github.com/theislab/DeepCollisionalCrossSection) | 14 | 5 | 1 | 6 | +| [theislab/DRVI](https://github.com/theislab/DRVI) | 13 | 1 | 1 | 1 | | [theislab/multicpa](https://github.com/theislab/multicpa) | 13 | 2 | 1 | 2 | | [theislab/scanpy-in-R](https://github.com/theislab/scanpy-in-R) | 13 | 3 | 1 | 0 | | [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 13 | 3 | 2 | 4 | | [theislab/GWAS-scRNAseq-Integration](https://github.com/theislab/GWAS-scRNAseq-Integration) | 12 | 5 | 0 | 12 | +| [theislab/inVAE](https://github.com/theislab/inVAE) | 12 | 3 | 0 | 1 | | [theislab/MetaMap](https://github.com/theislab/MetaMap) | 12 | 7 | 0 | 8 | | [theislab/ncem_tutorials](https://github.com/theislab/ncem_tutorials) | 12 | 4 | 6 | 0 | -| [theislab/inVAE](https://github.com/theislab/inVAE) | 11 | 3 | 0 | 1 | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 4 | 6 | | [theislab/moslin](https://github.com/theislab/moslin) | 11 | 1 | 0 | 1 | | [theislab/cross_system_integration](https://github.com/theislab/cross_system_integration) | 10 | 2 | 11 | 2 | | [theislab/diffxpy_tutorials](https://github.com/theislab/diffxpy_tutorials) | 10 | 8 | 4 | 2 | @@ -123,6 +122,7 @@ GitHub Dashboard | [theislab/theislab.github.io](https://github.com/theislab/theislab.github.io) | 6 | 2 | 9 | 0 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 7 | | [theislab/atlas-feature-selection-benchmark](https://github.com/theislab/atlas-feature-selection-benchmark) | 5 | 2 | 0 | 0 | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 19 | 1 | | [theislab/flowVI](https://github.com/theislab/flowVI) | 5 | 3 | 0 | 0 | | [theislab/InterpretableAutoencoders](https://github.com/theislab/InterpretableAutoencoders) | 5 | 4 | 0 | 0 | | [theislab/kbranches](https://github.com/theislab/kbranches) | 5 | 7 | 0 | 0 | @@ -179,6 +179,7 @@ GitHub Dashboard | [theislab/ehrapy-site](https://github.com/theislab/ehrapy-site) | 1 | 2 | 0 | 0 | | [theislab/ifcseq](https://github.com/theislab/ifcseq) | 1 | 3 | 0 | 1 | | [theislab/MS_mv_modelling](https://github.com/theislab/MS_mv_modelling) | 1 | 2 | 0 | 1 | +| [theislab/pertpy-reproducibility](https://github.com/theislab/pertpy-reproducibility) | 1 | 2 | 0 | 1 | | [theislab/sc_mae](https://github.com/theislab/sc_mae) | 1 | 2 | 0 | 0 | | [theislab/spapros_reproducibility](https://github.com/theislab/spapros_reproducibility) | 1 | 1 | 0 | 1 | | [theislab/tardis](https://github.com/theislab/tardis) | 1 | 1 | 0 | 2 | @@ -208,7 +209,6 @@ GitHub Dashboard | [theislab/organoid_dexamethason_stimulation](https://github.com/theislab/organoid_dexamethason_stimulation) | 0 | 3 | 0 | 1 | | [theislab/pancreas-targeted_pharmacology](https://github.com/theislab/pancreas-targeted_pharmacology) | 0 | 6 | 1 | 2 | | [theislab/pdac_analysis](https://github.com/theislab/pdac_analysis) | 0 | 2 | 0 | 0 | -| [theislab/pertpy-reproducibility](https://github.com/theislab/pertpy-reproducibility) | 0 | 2 | 0 | 1 | | [theislab/prophet-reproducibility](https://github.com/theislab/prophet-reproducibility) | 0 | 3 | 0 | 0 | | [theislab/reproducability_AutoGeneS](https://github.com/theislab/reproducability_AutoGeneS) | 0 | 3 | 0 | 0 | | [theislab/reproducibility_AutoGeneS](https://github.com/theislab/reproducibility_AutoGeneS) | 0 | 3 | 0 | 0 | diff --git a/index.html b/index.html index 0b991bd..eb4bedd 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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- + + + + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + + + + + + + + @@ -704,271 +685,285 @@

Repos without Github Actions

+ + + + + + + - + - - - - - - - + + + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + + + + + + + + @@ -1362,215 +1357,215 @@

Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - - - - diff --git a/repos.csv b/repos.csv index a2f3acb..0b39700 100644 --- a/repos.csv +++ b/repos.csv @@ -9,10 +9,10 @@ theislab,2021_Aliluev_Tritschler_gut_HFD,theislab/2021_Aliluev_Tritschler_gut_HF theislab,2021_PRMT7_regulates_Monocyte_Extravasation,theislab/2021_PRMT7_regulates_Monocyte_Extravasation,1,4,0,2,FALSE,https://github.com/theislab/2021_PRMT7_regulates_Monocyte_Extravasation,1,NA,NA,NA theislab,2022_Bakhti_pancreas_Syt13,theislab/2022_Bakhti_pancreas_Syt13,0,3,0,0,FALSE,https://github.com/theislab/2022_Bakhti_pancreas_Syt13,0,NA,NA,NA theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancreas_cross_species,4,3,0,1,FALSE,https://github.com/theislab/2022_Tritschler_pancreas_cross_species,4,NA,NA,NA -theislab,AutoGeneS,theislab/AutoGeneS,56,6,6,8,FALSE,https://github.com/theislab/AutoGeneS,56,NA,NA,NA +theislab,AutoGeneS,theislab/AutoGeneS,57,6,6,8,FALSE,https://github.com/theislab/AutoGeneS,57,NA,NA,NA theislab,CFGen,theislab/CFGen,6,1,1,4,FALSE,https://github.com/theislab/CFGen,6,NA,NA,NA theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA -theislab,DRVI,theislab/DRVI,13,1,1,1,FALSE,https://github.com/theislab/DRVI,13,fdc2eb6d863bc05060a90e96e5a1698b340abf15,Improve docs (#8),[![](https://github.com/theislab/DRVI/workflows/Check%20Build/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11956494135) [![](https://github.com/theislab/DRVI/workflows/Test/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11956494133) +theislab,DRVI,theislab/DRVI,13,1,1,1,FALSE,https://github.com/theislab/DRVI,13,NA,NA,NA theislab,DRVI_reproducibility,theislab/DRVI_reproducibility,1,3,0,0,FALSE,https://github.com/theislab/DRVI_reproducibility,1,NA,NA,NA theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,14,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,14,NA,NA,NA theislab,DeepRT,theislab/DeepRT,30,2,11,10,FALSE,https://github.com/theislab/DeepRT,30,NA,NA,NA @@ -31,9 +31,7 @@ theislab,MS_mv_modelling,theislab/MS_mv_modelling,1,2,0,1,FALSE,https://github.c theislab,MetaMap,theislab/MetaMap,12,7,0,8,FALSE,https://github.com/theislab/MetaMap,12,NA,NA,NA theislab,MetaMap-web,theislab/MetaMap-web,0,4,2,0,FALSE,https://github.com/theislab/MetaMap-web,0,NA,NA,NA theislab,PathReg,theislab/PathReg,8,3,0,0,FALSE,https://github.com/theislab/PathReg,8,NA,NA,NA -theislab,anndata2ri,theislab/anndata2ri,129,7,13,16,FALSE,https://github.com/theislab/anndata2ri,129,adcf11637c9fb94e9cfea98f1565255bfdbbc66f,"[pre-commit.ci] pre-commit autoupdate (#199) - -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/11901588594) +theislab,anndata2ri,theislab/anndata2ri,129,7,14,16,FALSE,https://github.com/theislab/anndata2ri,129,NA,NA,NA theislab,archmap,theislab/archmap,4,2,3,0,FALSE,https://github.com/theislab/archmap,4,NA,NA,NA theislab,archmap_admin,theislab/archmap_admin,0,2,0,0,FALSE,https://github.com/theislab/archmap_admin,0,NA,NA,NA theislab,archmap_data,theislab/archmap_data,1,0,2,0,FALSE,https://github.com/theislab/archmap_data,1,NA,NA,NA @@ -138,114 +136,89 @@ theislab,cpa,theislab/cpa,88,5,21,17,FALSE,https://github.com/theislab/cpa,88,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,7,2,1,1,FALSE,https://github.com/theislab/cpa-reproducibility,7,NA,NA,NA theislab,cross_system_integration,theislab/cross_system_integration,10,2,11,2,FALSE,https://github.com/theislab/cross_system_integration,10,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA -theislab,dca,theislab/dca,247,11,32,72,FALSE,https://github.com/theislab/dca,247,NA,NA,NA +theislab,dca,theislab/dca,249,11,32,72,FALSE,https://github.com/theislab/dca,249,NA,NA,NA theislab,deepflow,theislab/deepflow,31,5,1,14,FALSE,https://github.com/theislab/deepflow,31,NA,NA,NA theislab,destiny,theislab/destiny,77,5,31,11,FALSE,https://github.com/theislab/destiny,77,NA,NA,NA theislab,diffxpy,theislab/diffxpy,193,7,108,23,FALSE,https://github.com/theislab/diffxpy,193,NA,NA,NA theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,235,5,49,19,FALSE,https://github.com/theislab/ehrapy,235,d3d6d3c74d6b80d7858c657897341865bc1028c0,"[pre-commit.ci] pre-commit autoupdate (#826) - -updates: -- [github.com/astral-sh/ruff-pre-commit: v0.7.3 → v0.7.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.7.3...v0.7.4) - -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11996024643) -theislab,ehrapy,theislab/ehrapy,235,5,49,19,FALSE,https://github.com/theislab/ehrapy,235,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) -theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA -theislab,ehrapy-datasets,theislab/ehrapy-datasets,6,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,6,e441a5d0912396064360799f10de973b377ba6a5,"Merge pull request #23 from theislab/diabetes-update - -change diabetes dataset doc",[![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) -theislab,ehrapy-reproducibility,theislab/ehrapy-reproducibility,2,1,1,0,FALSE,https://github.com/theislab/ehrapy-reproducibility,2,NA,NA,NA -theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA -theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,7,3,1,1,FALSE,https://github.com/theislab/ehrapy-tutorials,7,NA,NA,NA -theislab,ehrdata,theislab/ehrdata,5,2,19,1,FALSE,https://github.com/theislab/ehrdata,5,5be55fb571f9af23d0e85d4c321b74058e3fe74b,"Towards v0.1.0 (#62) +theislab,ehrapy,theislab/ehrapy,235,5,48,19,FALSE,https://github.com/theislab/ehrapy,235,67fedbf59c20e6d9cb52212e6c74a742995b2df1,"Make all imputation methods consistent in regard to encoding requirements (#827) -* first change in notebook - -* inspect why 2 omop dt fail on github ci - -* inspect why 2 omop dt fail on github ci - -* inspect why 2 omop dt fail on github ci - -* reduce redundancy; enhance docstrings - -* fix paths - -* towards more datasets +* Before test -* load datasets with ehrapy's download function copied; cleaner table extraction +* After tests -* remove dataloader +* [pre-commit.ci] auto fixes from pre-commit.com hooks -* remove physio2012 stubs +for more information, see https://pre-commit.ci -* switch to logging instead of prints +* Apply suggestions from code review part 1 -* check individual connections to resolve synthea27nj +Co-authored-by: Lukas Heumos -* try to empty cache +* @nicolassidoux +@Zethson +Apply suggestions from code review part 2 -* new test dir, undo workflows.yml +* [pre-commit.ci] auto fixes from pre-commit.com hooks -* try different dir +for more information, see https://pre-commit.ci -* improve download and datasets +* Updated _base_check_imputation to throw exception -* fix pandas warning +* [pre-commit.ci] auto fixes from pre-commit.com hooks -* use , delimiter in duckdb +for more information, see https://pre-commit.ci -* remove extract's from api.md +* Added spinner support -* read w/ pandas instead of duckdb +* [pre-commit.ci] auto fixes from pre-commit.com hooks -* support different capitalizations; check if pre-release fail again..? +for more information, see https://pre-commit.ci -* remove load +* After @eroell review -* remove some things I forgot +* [pre-commit.ci] auto fixes from pre-commit.com hooks -* move validity checks to separate file +for more information, see https://pre-commit.ci -* enable and vanilla test for specimen table +* Changed spinner to Rich -* escape the % in duckdb's read_csv +* [pre-commit.ci] auto fixes from pre-commit.com hooks -* add robustness: empty observation,measurement,speciment acceptable +for more information, see https://pre-commit.ci -* add empty_observation test data +* Fixed missing import -* add support for start or end of e.g. drug_exposure +* [pre-commit.ci] auto fixes from pre-commit.com hooks -* pypots minimal demo +for more information, see https://pre-commit.ci -* add pypots to tutorial index +* After @eroell review -* add one-hot presence encoding for a feature +* Updated returns in imputation, rewrote miss_forest_impute -* add first basic interval-variable support for drug_exposure +* [pre-commit.ci] auto fixes from pre-commit.com hooks -* add strict tests for setup_variables +for more information, see https://pre-commit.ci -* add tight test for interval vars drug_exposure table +* Fixed imputation returns -* support condition_occurrence - -* support procedure_occurrence - -* support device_exposure - -* support drug_era - -* support dose_era - -* support condition_era - -* support episode +--------- -* Refactor time interval table query function",[![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/11976257798) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/11976257806) +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> +Co-authored-by: Lukas Heumos +Co-authored-by: PRECIPOINT\nicolas.sidoux ",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934461) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934460) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934463) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934462) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12019934474) +theislab,ehrapy,theislab/ehrapy,235,5,48,19,FALSE,https://github.com/theislab/ehrapy,235,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) +theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA +theislab,ehrapy-datasets,theislab/ehrapy-datasets,6,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,6,e441a5d0912396064360799f10de973b377ba6a5,"Merge pull request #23 from theislab/diabetes-update + +change diabetes dataset doc",[![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) +theislab,ehrapy-reproducibility,theislab/ehrapy-reproducibility,2,1,1,0,FALSE,https://github.com/theislab/ehrapy-reproducibility,2,NA,NA,NA +theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA +theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,7,3,1,1,FALSE,https://github.com/theislab/ehrapy-tutorials,7,NA,NA,NA +theislab,ehrdata,theislab/ehrdata,5,2,19,1,FALSE,https://github.com/theislab/ehrdata,5,NA,NA,NA theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,9,5,3,4,FALSE,https://github.com/theislab/expiMap_reproducibility,9,NA,NA,NA @@ -257,7 +230,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,2b831093573f492966a998120f201872fd49a78a,[status] 2024-11-24 12:15:18 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12009589491) +theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,7dad9713bcfec34564b6d2d54c9a46505418ab3c,[status] 2024-11-25 12:12:50 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12030146977) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,9,3,4,0,FALSE,https://github.com/theislab/greatpy,9,NA,NA,NA @@ -267,7 +240,7 @@ theislab,hadge-reproducibility,theislab/hadge-reproducibility,0,2,0,0,FALSE,http theislab,icml_cbw_2022_clcvae,theislab/icml_cbw_2022_clcvae,0,3,0,0,FALSE,https://github.com/theislab/icml_cbw_2022_clcvae,0,NA,NA,NA theislab,idtrack,theislab/idtrack,0,1,6,0,FALSE,https://github.com/theislab/idtrack,0,ec9e9f53e59dddcae5fe1464eb36d9adab92411b,Debugging,[![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) theislab,ifcseq,theislab/ifcseq,1,3,0,1,FALSE,https://github.com/theislab/ifcseq,1,NA,NA,NA -theislab,inVAE,theislab/inVAE,11,3,0,1,FALSE,https://github.com/theislab/inVAE,11,NA,NA,NA +theislab,inVAE,theislab/inVAE,12,3,0,1,FALSE,https://github.com/theislab/inVAE,12,NA,NA,NA theislab,integraph,theislab/integraph,0,2,4,0,FALSE,https://github.com/theislab/integraph,0,NA,NA,NA theislab,interaction-tools,theislab/interaction-tools,2,4,0,0,FALSE,https://github.com/theislab/interaction-tools,2,NA,NA,NA theislab,interactive_plotting,theislab/interactive_plotting,21,4,11,7,FALSE,https://github.com/theislab/interactive_plotting,21,NA,NA,NA @@ -277,12 +250,12 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,8,1,2,0,FA theislab,kBET,theislab/kBET,154,8,9,23,FALSE,https://github.com/theislab/kBET,154,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,2,3,0,2,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,2,NA,NA,NA -theislab,moscot,theislab/moscot,116,3,45,9,FALSE,https://github.com/theislab/moscot,116,36d93bf11a407023e622b21aabca032c1885d249,"Merge pull request #737 from theislab/fix/linting_attr +theislab,moscot,theislab/moscot,116,3,43,9,FALSE,https://github.com/theislab/moscot,116,36d93bf11a407023e622b21aabca032c1885d249,"Merge pull request #737 from theislab/fix/linting_attr Fixing Linting and Plotting Error",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) -theislab,moscot,theislab/moscot,116,3,45,9,FALSE,https://github.com/theislab/moscot,116,ed48242a270e23fdcaba513235b71c2cce997f33,"Merge pull request #762 from theislab/pre-commit-ci-update-config +theislab,moscot,theislab/moscot,116,3,43,9,FALSE,https://github.com/theislab/moscot,116,4080a94a26839b0dc3691b3fb9dbbf0d0909c29a,"Merge pull request #766 from theislab/refactor/remove-protocol-classes -[pre-commit.ci] pre-commit autoupdate",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12000921752) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12000851268) +Refactor/remove protocol classes",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12027237589) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/12027237595) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12027237587) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA @@ -309,11 +282,11 @@ theislab,ncem_tutorials,theislab/ncem_tutorials,12,4,6,0,FALSE,https://github.co theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,21,6,3,3,FALSE,https://github.com/theislab/neural_organoid_atlas,21,NA,NA,NA theislab,nicheformer,theislab/nicheformer,65,4,14,2,FALSE,https://github.com/theislab/nicheformer,65,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA -theislab,paga,theislab/paga,208,10,24,33,FALSE,https://github.com/theislab/paga,208,NA,NA,NA +theislab,paga,theislab/paga,209,10,24,33,FALSE,https://github.com/theislab/paga,209,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,6,1,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,6,3,0,6,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,6,NA,NA,NA theislab,pdac_analysis,theislab/pdac_analysis,0,2,0,0,FALSE,https://github.com/theislab/pdac_analysis,0,NA,NA,NA -theislab,pertpy-reproducibility,theislab/pertpy-reproducibility,0,2,0,1,FALSE,https://github.com/theislab/pertpy-reproducibility,0,NA,NA,NA +theislab,pertpy-reproducibility,theislab/pertpy-reproducibility,1,2,0,1,FALSE,https://github.com/theislab/pertpy-reproducibility,1,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA theislab,prophet,theislab/prophet,25,5,2,2,FALSE,https://github.com/theislab/prophet,25,NA,NA,NA theislab,prophet-reproducibility,theislab/prophet-reproducibility,0,3,0,0,FALSE,https://github.com/theislab/prophet-reproducibility,0,NA,NA,NA @@ -321,7 +294,7 @@ theislab,pseudodynamics,theislab/pseudodynamics,39,7,0,6,FALSE,https://github.co theislab,reproducability_AutoGeneS,theislab/reproducability_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducability_AutoGeneS,0,NA,NA,NA theislab,reproducibility_AutoGeneS,theislab/reproducibility_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducibility_AutoGeneS,0,NA,NA,NA theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,8,8,2,3,FALSE,https://github.com/theislab/sc-best-practices-ce,8,NA,NA,NA -theislab,sc-pert,theislab/sc-pert,143,5,6,13,FALSE,https://github.com/theislab/sc-pert,143,NA,NA,NA +theislab,sc-pert,theislab/sc-pert,144,5,6,13,FALSE,https://github.com/theislab/sc-pert,144,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,33,4,5,0,FALSE,https://github.com/theislab/scArches-reproducibility,33,NA,NA,NA theislab,scCODA,theislab/scCODA,150,9,8,24,FALSE,https://github.com/theislab/scCODA,150,NA,NA,NA @@ -339,18 +312,16 @@ theislab,scanpy-in-R,theislab/scanpy-in-R,13,3,1,0,FALSE,https://github.com/thei theislab,scanpy.org,theislab/scanpy.org,0,7,1,0,FALSE,https://github.com/theislab/scanpy.org,0,NA,NA,NA theislab,scanpy_neighbors,theislab/scanpy_neighbors,0,3,0,1,FALSE,https://github.com/theislab/scanpy_neighbors,0,NA,NA,NA theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,1,FALSE,https://github.com/theislab/scanpy_squidpy_demo_2021,2,NA,NA,NA -theislab,scanpydoc,theislab/scanpydoc,12,6,3,6,FALSE,https://github.com/theislab/scanpydoc,12,edc340709d5f57fbcdecb9d175c7efbeb7ccf5cb,"[pre-commit.ci] pre-commit autoupdate (#183) - -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11901586701) +theislab,scanpydoc,theislab/scanpydoc,12,6,4,6,FALSE,https://github.com/theislab/scanpydoc,12,NA,NA,NA theislab,scarches,theislab/scarches,335,12,53,51,FALSE,https://github.com/theislab/scarches,335,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA -theislab,scgen,theislab/scgen,268,9,28,56,FALSE,https://github.com/theislab/scgen,268,NA,NA,NA +theislab,scgen,theislab/scgen,269,9,28,56,FALSE,https://github.com/theislab/scgen,269,NA,NA,NA theislab,scgen-reproducibility,theislab/scgen-reproducibility,22,4,6,8,FALSE,https://github.com/theislab/scgen-reproducibility,22,NA,NA,NA theislab,scib,theislab/scib,311,14,42,63,FALSE,https://github.com/theislab/scib,NA,acfde787873108439a66a9bb25f493119b3e87df,Bump version: 1.1.5 → 1.1.6,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033984) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033925) theislab,scib-pipeline,theislab/scib-pipeline,66,7,16,28,FALSE,https://github.com/theislab/scib-pipeline,66,NA,NA,NA theislab,scib-reproducibility,theislab/scib-reproducibility,55,6,4,13,FALSE,https://github.com/theislab/scib-reproducibility,55,NA,NA,NA -theislab,scvelo,theislab/scvelo,419,13,61,103,FALSE,https://github.com/theislab/scvelo,419,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) +theislab,scvelo,theislab/scvelo,419,13,62,103,FALSE,https://github.com/theislab/scvelo,419,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) * Move logging to dedicated module @@ -374,7 +345,7 @@ submodule, local imports do not work anymore. * Remove redundant function definition * Remove `print_passed_time`",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) -theislab,scvelo,theislab/scvelo,419,13,61,103,FALSE,https://github.com/theislab/scvelo,419,b2f31b345641efdccd39fbcb8c0beaa0014b4b88,"Update `pyproject.toml` (#1226) +theislab,scvelo,theislab/scvelo,419,13,62,103,FALSE,https://github.com/theislab/scvelo,419,b2f31b345641efdccd39fbcb8c0beaa0014b4b88,"Update `pyproject.toml` (#1226) Fix package directory.",[![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) theislab,scvelo_notebooks,theislab/scvelo_notebooks,31,2,4,13,FALSE,https://github.com/theislab/scvelo_notebooks,31,NA,NA,NA @@ -386,7 +357,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,784,19,73,189,FALSE,https://github.com/theislab/single-cell-best-practices,784,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,785,19,73,189,FALSE,https://github.com/theislab/single-cell-best-practices,785,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303) * fix additional ""does"" @@ -413,12 +384,12 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,784,19,7 * fix typo * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,264,13,32,29,FALSE,https://github.com/theislab/single-cell-transformer-papers,264,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1400,30,21,463,FALSE,https://github.com/theislab/single-cell-tutorial,1400,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,266,13,33,29,FALSE,https://github.com/theislab/single-cell-transformer-papers,266,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1402,30,21,463,FALSE,https://github.com/theislab/single-cell-tutorial,1402,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA -theislab,spapros,theislab/spapros,28,3,11,7,FALSE,https://github.com/theislab/spapros,28,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer +theislab,spapros,theislab/spapros,29,3,11,7,FALSE,https://github.com/theislab/spapros,29,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer -adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703702) [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703692) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703696) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703698) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12001565155) +adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703702) [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703692) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703696) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703698) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12022061841) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,1,1,0,1,FALSE,https://github.com/theislab/spapros_reproducibility,1,NA,NA,NA
theislab/single-cell-best-practices784785 19 73 189 theislab/scvelo 419 136162 103 theislab/scvelo 419 136162 103 b2f31b theislab/ehrapy 235 54948 19d3d6d3 + + + +67fedb
theislab/ehrapy 235 54948 19 e0e081 ceb14c
theislab/anndata2ri12971316adcf11
theislab/moscot 116 34543 9 36d93b
theislab/moscot 116 34543 9 -ed4824 + +4080a9
theislab/ncem 103 6 d03a07
theislab/graphcompass 34 2 7c4551
theislab/mubind2832903f62f8
theislab/spapros2829 3 11 7 1ec08e
theislab/mubind2832903f62f8
theislab/hadge 24 3 1ed105
theislab/multimil 19 5 c721ba
theislab/geome 16 3 402a0a
theislab/DRVI13111 -fdc2eb
theislab/scanpydoc12636edc340
theislab/cellrank2_reproducibility 8 1 8020e7
theislab/moscot_notebooks 7 1 210765
theislab/spapros-pipeline 7 2 fe84cf
theislab/cellrank_notebooks 6 4 677784
theislab/ehrapy-datasets 6 2 e441a5
theislab/ehrdata52191 -5be55f
theislab/gh-dashboard 3 2 0 02b83107dad97
theislab/spatialdata-db
theislab/single-cell-tutorial14001402 30 21 463
theislab/scgen268269 9 28 56
theislab/single-cell-transformer-papers264266 133233 29
theislab/dca247249 11 32 72
theislab/paga208209 10 24 33
theislab/sc-pert143144 5 6 13
theislab/anndata2ri12971416
theislab/chemCPA 104 5 11 24
theislab/cpa 88 5 21 17
theislab/destiny 77 5 31 11
theislab/scib-pipeline 66 7 16 28
theislab/nicheformer 65 4 14 2
theislab/AutoGeneS5657 6 6 8
theislab/scib-reproducibility 55 6 4 13
theislab/trVAE 55 6 3 12
theislab/spatial_scog_workshop_2022 50 9 0 27
theislab/scTab 49 4 1 9
theislab/pseudodynamics 39 7 0 6
theislab/tcellmatch 37 9 3 7
theislab/scArches-reproducibility 33 4 5 0
theislab/deepflow 31 5 1 14
theislab/scvelo_notebooks 31 2 4 13
theislab/DeepRT 30 2 11 10
theislab/batchglm 27 3 47 9
theislab/graph_abstraction 26 8 0 10
theislab/prophet 25 5 2 2
theislab/Covid_meta_analysis 24 8 2 11
theislab/scgen-reproducibility 22 4 6 8
theislab/interactive_plotting 21 4 11 7
theislab/neural_organoid_atlas 21 6 3 3
theislab/multigrate 16 3 7 6
theislab/campa 14 4 6 4
theislab/cellrank_reproducibility 14 2 1 8
theislab/DeepCollisionalCrossSection 14 5 1 6
theislab/DRVI13111
theislab/multicpa 13 12
theislab/inVAE12301
theislab/MetaMap 12 7 0 8
theislab/ncem_tutorials 12 4 6 0
theislab/inVAE11301
theislab/scanpydoc12646
theislab/moslin 11 1 0 1
theislab/cross_system_integration 10 2 11 2
theislab/diffxpy_tutorials 10 8 4 2
theislab/gastrulation_analysis 10 4 0 1
theislab/scAnalysisTutorial 10 3 0 3
theislab/superexacttestpy 10 2 3 0
theislab/enrichment_analysis_celltype 9 5 0 4
theislab/expiMap_reproducibility 9 5 3 4
theislab/greatpy 9 3 4 0
theislab/IMPA 9 2 1 0
theislab/scatac_poisson_reproducibility 9 3 0 0
theislab/trvaep 9 3 0 6
theislab/jump-cpg0016-segmentation 8 1 2 0
theislab/ncem_benchmarks 8 4 4 2
theislab/PathReg 8 3 0 0
theislab/sc-best-practices-ce 8 8 2 3
theislab/scCODA_reproducibility 8 5 0 1
theislab/squidpy_reproducibility 8 2 0 7
theislab/tissue_tensorflow 8 3 0 0
theislab/2018_Angelidis 7 4 0 6
theislab/2019_Strunz 7 5 1 11
theislab/2020_Mayr 7 6 0 8
theislab/cpa-reproducibility 7 2 1 1
theislab/ehrapy-tutorials 7 3 1 1
theislab/mouse_cross-condition_pancreatic_islet_atlas 7 2 0 4
theislab/scachepy 7 5 3 1
theislab/CFGen 6 1 1 4
theislab/disent 6 3 0 0
theislab/intercode 6 3 1 1
theislab/multimil_reproducibility 6 3 4 1
theislab/pancreatic-endocrinogenesis 6 3 0 6
theislab/sfaira_tutorials 6 4 4 2
theislab/theislab.github.io 6 2 9 0
theislab/trVAE_reproducibility 6 3 2 7
theislab/atlas-feature-selection-benchmark 5 2 0 0
theislab/ehrdata52191
theislab/flowVI 5 1
theislab/pertpy-reproducibility1201
theislab/sc_mae 1 2 0 0
theislab/spapros_reproducibility 1 1 0 1
theislab/tardis 1 1 0 2
theislab/tissue_reproducibility 1 3 0 0
theislab/transcription_factor_activity 1 1 5 1
theislab/unbalanced_monge_maps_single_cell 1 1 0 0
theislab/zebrafish_bipolarity 1 4 0 1
theislab/2015-grn-inference 0 2 0 0
theislab/2020_Inhibition_LTbetaR-signalling 0 4 0 3
theislab/2022_Bakhti_pancreas_Syt13 0 3 0 0
theislab/archmap_admin 0 2 0 0
theislab/archmap_doc 0 3 0 0
theislab/collideseq_reproducibility 0 2 0 0
theislab/consensus-clustering-evaluation 0 4 0 0
theislab/dali 0 7 0 1
theislab/edgepy 0 3 0 0
theislab/ELS_analysis 0 2 0 0
theislab/GoBI_single_cell 0 3 0 0
theislab/hadge-reproducibility 0 2 0 0
theislab/icml_cbw_2022_clcvae 0 3 0 0
theislab/integraph 0 2 4 0
theislab/ipsc_ipd_analysis 0 3 0 0
theislab/LungAgingAtlas 0 5 0 0
theislab/MetaMap-web 0 4 2 0
theislab/mubind-benchmark 0 2 19 0
theislab/multicpa-reproducibility 0 2 0 0
theislab/organoid_dexamethason_stimulation 0 3 0 1
theislab/pancreas-targeted_pharmacology 0 6 1 2
theislab/pdac_analysis 0 2 0 0
theislab/pertpy-reproducibility0201
theislab/prophet-reproducibility 0