DESCRIPTION

Package: fishpond
Title: Fishpond: downstream methods and tools for expression data
Version: 2.7.4
Authors@R: c(
    person("Anqi", "Zhu", role=c("aut","ctb")),
    person("Michael", "Love", email="michaelisaiahlove@gmail.com", role=c("aut","cre")),
    person("Avi", "Srivastava", role=c("aut","ctb")),
    person("Rob", "Patro", role=c("aut","ctb")),
    person("Joseph", "Ibrahim", role=c("aut","ctb")),
    person("Hirak", "Sarkar", role="ctb"),
    person("Euphy", "Wu", role="ctb"),
    person("Noor", "Pratap Singh", role="ctb"),
    person("Scott", "Van Buren", role="ctb"),
    person("Dongze", "He", role="ctb"),
    person("Steve", "Lianoglou", role="ctb"),
    person("Wes", "Wilson", role="ctb"),
    person("Jeroen", "Gilis", role="ctb")
    )
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Fishpond contains methods for differential transcript
    and gene expression analysis of RNA-seq data using inferential
    replicates for uncertainty of abundance quantification,
    as generated by Gibbs sampling or bootstrap sampling. Also the
    package contains a number of utilities for working with Salmon
    and Alevin quantification files.
Imports: graphics, stats, utils, methods, abind, gtools, qvalue, S4Vectors,
    IRanges, SummarizedExperiment, GenomicRanges, matrixStats, svMisc,
    Matrix, SingleCellExperiment, jsonlite
Suggests: testthat, knitr, rmarkdown, macrophage, tximeta, org.Hs.eg.db,
    samr, DESeq2, apeglm, tximportData, limma, ensembldb, EnsDb.Hsapiens.v86,
    GenomicFeatures, AnnotationDbi, pheatmap, Gviz, GenomeInfoDb, data.table
License: GPL-2
Encoding: UTF-8
URL: https://thelovelab.github.io/fishpond, https://thelovelab.com/mikelove/fishpond
BugReports: https://support.bioconductor.org/tag/fishpond
biocViews: Sequencing, RNASeq, GeneExpression,
    Transcription, Normalization, Regression,
    MultipleComparison, BatchEffect, Visualization,
    DifferentialExpression, DifferentialSplicing,
    AlternativeSplicing, SingleCell
VignetteBuilder: knitr
LazyData: true
RoxygenNote: 7.2.3