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app.js
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define(['jquery', 'knockout', 'jnj_chart', 'd3', 'ohdsi.util', 'appConfig', 'facets', 'knockout-persist', 'css!styles/tabs.css', 'css!styles/buttons.css'], function ($, ko, jnj_chart, d3, ohdsiUtil, config) {
var appModel = function () {
$.support.cors = true;
var self = this;
$('#querytext').focus();
self.appInitializationFailed = ko.observable(false);
self.initPromises = [];
self.applicationStatus = ko.observable('initializing');
self.searchTabMode = ko.observable('simple');
self.pendingSearch = ko.observable(false);
self.pageTitle = ko.pureComputed(function () {
var pageTitle = "ATLAS";
switch (self.currentView()){
case 'loading':
pageTitle = pageTitle + ": Loading";
break;
case 'home':
pageTitle = pageTitle + ": Home";
break;
case 'search':
pageTitle = pageTitle + ": Search";
break;
case 'conceptsets':
case 'conceptset':
pageTitle = pageTitle + ": Concept Sets";
break;
case 'concept':
pageTitle = pageTitle + ": Concept";
break;
case 'cohortdefinitions':
case 'cohortdefinition':
pageTitle = pageTitle + ": Cohorts";
break;
case 'irbrowser':
case 'iranalysis':
pageTitle = pageTitle + ": Incidence Rate";
break;
case 'estimations':
case 'estimation':
pageTitle = pageTitle + ": Estimation";
break;
case 'profiles':
pageTitle = pageTitle + ": Profiles";
break;
}
if (self.hasUnsavedChanges()) {
pageTitle = "*" + pageTitle + " (unsaved)";
}
return pageTitle;
});
self.initComplete = function () {
if (!self.appInitializationFailed()) {
var routerOptions = {
notfound: function () {
self.currentView('search');
}
};
var routes = {
'/': function () {
document.location = "#/home";
},
'/concept/:conceptId:': function (conceptId) {
require(['concept-manager'], function () {
self.currentConceptId(conceptId);
self.loadConcept(conceptId);
});
},
'/cohortdefinitions': function () {
require(['cohort-definitions', 'cohort-definition-manager', 'cohort-definition-browser'], function () {
self.currentView('cohortdefinitions');
});
},
'/cohortdefinition/:cohortDefinitionId:': function (cohortDefinitionId) {
require(['cohortbuilder/CohortDefinition', 'components/atlas.cohort-editor', 'cohort-definitions', 'cohort-definition-manager', 'cohort-definition-browser', 'conceptset-editor', 'report-manager', 'explore-cohort'], function (CohortDefinition) {
self.currentView('cohortdefinition');
self.currentCohortDefinitionMode('definition');
self.loadCohortDefinition(cohortDefinitionId, null, 'cohortdefinition', 'details');
});
},
'/cohortdefinition/:cohortDefinitionId/conceptset/:conceptSetId/:mode:': function (cohortDefinitionId, conceptSetId, mode) {
require(['report-manager', 'cohortbuilder/CohortDefinition', 'components/atlas.cohort-editor', 'cohort-definitions', 'cohort-definition-manager', 'cohort-definition-browser', 'conceptset-editor','explore-cohort'], function (CohortDefinition) {
self.currentView('cohortdefinition');
self.currentCohortDefinitionMode('conceptsets');
//if (!ohdsiUtil.hasState('cohortDefTab'))
//ohdsiUtil.setState('cohortDefTab', 'conceptsets');
self.loadCohortDefinition(cohortDefinitionId, conceptSetId, 'cohortdefinition', 'details');
});
},
'/datasources': function () {
require(['data-sources'], function () {
self.currentView('datasources');
});
},
'/datasources/:sourceName/:report': function (sourceName, report) {
require(['data-sources'], function () {
self.currentView('datasources');
});
},
'/configure': function () {
require(['configuration','r-manager'], function () {
self.currentView('configure');
});
},
'/home': function () {
require(['home'], function () {
self.currentView('home');
});
},
'/jobs': function () {
require(['job-manager'], function () {
self.currentView('jobs');
});
},
'/reports': function () {
require(['report-manager', 'cohort-definition-manager', 'cohort-definition-browser'], function () {
self.currentView('reports');
});
},
'/import': function () {
require(['importer'], function () {
self.currentView('import');
});
},
'/profiles': function () {
require(['profile-manager', 'cohort-definition-browser'], function () {
var cohortDefinitionId = util.getState('currentCohortDefinitionId');
if (typeof cohortDefinitionId !== "undefined")
self.loadCohortDefinition(cohortDefinitionId, null, 'profiles');
self.currentView('profiles');
});
},
/*
'/profiles/:sourceKey': function (sourceKey) {
require(['profile-manager', 'cohort-definition-browser'], function () {
self.currentView('profiles');
pageModel.sourceKey = sourceKey;
});
},
'/profiles/:sourceKey/:cohortDefinitionId/:personId': function (sourceKey, cohortDefinitionId, personId) {
require(['profile-manager', 'cohort-definition-browser'], function () {
self.currentView('profiles');
pageModel.personId = personId;
pageModel.sourceKey = sourceKey;
self.loadCohortDefinition(cohortDefinitionId, null, 'profiles', 'details');
});
},
*/
'/conceptset/:conceptSetId/:mode': function (conceptSetId, mode) {
require(['conceptset-manager', 'cohort-definition-browser'], function () {
self.loadConceptSet(conceptSetId, 'conceptset', 'repository', mode);
self.resolveConceptSetExpression();
});
},
'/conceptsets': function () {
require(['conceptset-browser'], function () {
self.currentView('conceptsets');
});
},
'/splash': function () {
self.currentView('splash');
},
'/search/:query:': function (query) {
require(['search'], function (search) {
self.currentView('search');
self.currentSearchValue(unescape(query));
});
},
'/search': function () {
require(['search'], function (search) {
self.currentSearch('');
self.searchTabMode('simple');
self.currentView('search');
});
},
'/feasibility': function () {
require(['feasibility-manager', 'feasibility-browser'], function () {
self.currentView('feasibilities');
});
},
'/feasibility/:feasibilityId:': function (feasibilityId) {
require(['feasibility-analyzer'], function () {
self.currentView('feasibility');
self.feasibilityId(feasibilityId);
});
},
'/estimation': function () {
require(['cohort-comparison-browser'], function () {
self.currentView('estimations');
});
},
'/estimation/:cohortComparisonId:': function (cohortComparisonId) {
require(['cohort-comparison-manager', 'cohort-definition-browser', 'components/atlas.cohort-editor', 'cohort-comparison-print-friendly', 'cohort-comparison-r-code'], function () {
self.currentCohortComparisonId(cohortComparisonId);
self.currentView('estimation');
});
},
'/iranalysis': function () {
require(['ir-browser'], function () {
self.currentView('irbrowser');
});
},
'/iranalysis/new': function(analysisId) {
require(['ir-manager'], function () {
self.selectedIRAnalysisId(null);
self.currentView('iranalysis');
});
},
'/iranalysis/:analysisId': function(analysisId) {
require(['ir-manager'], function () {
self.selectedIRAnalysisId(+analysisId);
self.currentView('iranalysis');
});
},
'/sptest': function () {
require(['sptest'], function () {
console.log("trying to load sptest");
self.currentView('sptest');
});
},
'/sptest_smoking': function () {
require(['sptest_smoking'], function () {
console.log("trying to load sptest_smoking");
self.currentView('sptest_smoking');
});
},
};
self.router = new Router(routes).configure(routerOptions);
self.router.init('/');
self.applicationStatus('running');
} else {
self.currentView('configure');
self.applicationStatus('initialization error');
}
setTimeout(function () {
$('#splash').hide();
}, 0);
setTimeout(function () {
$('#wrapperLeftMenu').fadeIn();
$('#wrapperMainWindow').fadeIn();
}, 10);
};
self.loadConcept = function (conceptId) {
self.currentView('loading');
var conceptPromise = $.ajax({
url: self.vocabularyUrl() + 'concept/' + conceptId,
method: 'GET',
contentType: 'application/json',
success: function (c, status, xhr) {
var exists = false;
for (var i = 0; i < self.recentConcept().length; i++) {
if (self.recentConcept()[i].CONCEPT_ID == c.CONCEPT_ID)
exists = true;
}
if (!exists) {
self.recentConcept.unshift(c);
}
if (self.recentConcept().length > 7) {
self.recentConcept.pop();
}
self.currentConcept(c);
self.currentView('concept');
},
error: function () {
alert('An error occurred while attempting to load the concept from your currently configured provider. Please check the status of your selection from the configuration button in the top right corner.');
}
});
// load related concepts once the concept is loaded
self.loadingRelated(true);
var relatedPromise = $.Deferred();
$.when(conceptPromise).done(function () {
self.metarchy = {
parents: ko.observableArray(),
children: ko.observableArray(),
synonyms: ko.observableArray()
};
$.ajax({
url: self.vocabularyUrl() + 'concept/' + conceptId + '/related',
method: 'GET',
contentType: 'application/json',
success: function (related) {
for (var i = 0; i < related.length; i++) {
self.metagorize(self.metarchy, related[i]);
}
var densityPromise = self.loadDensity(related);
$.when(densityPromise).done(function () {
self.relatedConcepts(related);
relatedPromise.resolve();
});
}
});
});
$.when(relatedPromise).done(function () {
self.loadingRelated(false);
});
// triggers once our async loading of the concept and related concepts is complete
$.when(conceptPromise).done(function () {
self.currentView('concept');
});
};
self.metagorize = function (metarchy, related) {
var concept = self.currentConcept();
var key = concept.VOCABULARY_ID + '.' + concept.CONCEPT_CLASS_ID;
if (self.metatrix[key] != undefined) {
var meta = self.metatrix[key];
if (self.hasRelationship(related, meta.childRelationships)) {
metarchy.children.push(related);
}
if (self.hasRelationship(related, meta.parentRelationships)) {
metarchy.parents.push(related);
}
}
};
self.searchConceptsOptions = {
Facets: [{
'caption': 'Vocabulary',
'binding': function (o) {
return o.VOCABULARY_ID;
}
}, {
'caption': 'Class',
'binding': function (o) {
return o.CONCEPT_CLASS_ID;
}
}, {
'caption': 'Domain',
'binding': function (o) {
return o.DOMAIN_ID;
}
}, {
'caption': 'Standard Concept',
'binding': function (o) {
return o.STANDARD_CONCEPT_CAPTION;
}
}, {
'caption': 'Invalid Reason',
'binding': function (o) {
return o.INVALID_REASON_CAPTION;
}
}, {
'caption': 'Has Records',
'binding': function (o) {
return parseInt(o.RECORD_COUNT.toString().replace(',', '')) > 0;
}
}, {
'caption': 'Has Descendant Records',
'binding': function (o) {
return parseInt(o.DESCENDANT_RECORD_COUNT.toString().replace(',', '')) > 0;
}
}]
};
self.relatedConceptsOptions = {
Facets: [{
'caption': 'Vocabulary',
'binding': function (o) {
return o.VOCABULARY_ID;
}
}, {
'caption': 'Standard Concept',
'binding': function (o) {
return o.STANDARD_CONCEPT_CAPTION;
}
}, {
'caption': 'Invalid Reason',
'binding': function (o) {
return o.INVALID_REASON_CAPTION;
}
}, {
'caption': 'Class',
'binding': function (o) {
return o.CONCEPT_CLASS_ID;
}
}, {
'caption': 'Domain',
'binding': function (o) {
return o.DOMAIN_ID;
}
}, {
'caption': 'Relationship',
'binding': function (o) {
values = [];
for (var i = 0; i < o.RELATIONSHIPS.length; i++) {
values.push(o.RELATIONSHIPS[i].RELATIONSHIP_NAME);
}
return values;
}
}, {
'caption': 'Has Records',
'binding': function (o) {
return parseInt(o.RECORD_COUNT.toString().replace(',', '')) > 0;
}
}, {
'caption': 'Has Descendant Records',
'binding': function (o) {
return parseInt(o.DESCENDANT_RECORD_COUNT.toString().replace(',', '')) > 0;
}
}, {
'caption': 'Distance',
'binding': function (o) {
values = [];
for (var i = 0; i < o.RELATIONSHIPS.length; i++) {
if (values.indexOf(o.RELATIONSHIPS[i].RELATIONSHIP_DISTANCE) == -1) {
values.push(o.RELATIONSHIPS[i].RELATIONSHIP_DISTANCE);
}
}
return values;
}
}]
};
self.searchConceptsColumns = [{
title: '<i class="fa fa-shopping-cart"></i>',
render: function (s, p, d) {
var css = '';
var icon = 'fa-shopping-cart';
if (self.selectedConceptsIndex[d.CONCEPT_ID] == 1) {
css = ' selected';
}
return '<i class="fa ' + icon + ' ' + css + '"></i>';
},
orderable: false,
searchable: false
}, {
title: 'Id',
data: 'CONCEPT_ID'
}, {
title: 'Code',
data: 'CONCEPT_CODE'
}, {
title: 'Name',
data: 'CONCEPT_NAME',
render: function (s, p, d) {
var valid = d.INVALID_REASON_CAPTION == 'Invalid' ? 'invalid' : '';
return '<a class="' + valid + '" href=\"#/concept/' + d.CONCEPT_ID + '\">' + d.CONCEPT_NAME + '</a>';
}
}, {
title: 'Class',
data: 'CONCEPT_CLASS_ID'
}, {
title: 'Standard Concept Caption',
data: 'STANDARD_CONCEPT_CAPTION',
visible: false
}, {
title: 'RC',
data: 'RECORD_COUNT',
className: 'numeric'
}, {
title: 'DRC',
data: 'DESCENDANT_RECORD_COUNT',
className: 'numeric'
}, {
title: 'Domain',
data: 'DOMAIN_ID'
}, {
title: 'Vocabulary',
data: 'VOCABULARY_ID'
}];
self.relatedConceptsColumns = [{
title: '<i class="fa fa-shopping-cart"></i>',
render: function (s, p, d) {
var css = '';
var icon = 'fa-shopping-cart';
if (self.selectedConceptsIndex[d.CONCEPT_ID] == 1) {
css = ' selected';
}
return '<i class="fa ' + icon + ' ' + css + '"></i>';
},
orderable: false,
searchable: false
}, {
title: 'Id',
data: 'CONCEPT_ID'
}, {
title: 'Code',
data: 'CONCEPT_CODE'
}, {
title: 'Name',
data: 'CONCEPT_NAME',
render: function (s, p, d) {
var valid = d.INVALID_REASON_CAPTION == 'Invalid' ? 'invalid' : '';
return '<a class="' + valid + '" href=\"#/concept/' + d.CONCEPT_ID + '\">' + d.CONCEPT_NAME + '</a>';
}
}, {
title: 'Class',
data: 'CONCEPT_CLASS_ID'
}, {
title: 'Standard Concept Caption',
data: 'STANDARD_CONCEPT_CAPTION',
visible: false
}, {
title: 'RC',
data: 'RECORD_COUNT',
className: 'numeric'
}, {
title: 'DRC',
data: 'DESCENDANT_RECORD_COUNT',
className: 'numeric'
}, {
title: 'Domain',
data: 'DOMAIN_ID'
}, {
title: 'Vocabulary',
data: 'VOCABULARY_ID'
}];
self.relatedSourcecodesColumns = [{
title: '',
render: function (s, p, d) {
var css = '';
var icon = 'fa-shopping-cart';
if (self.selectedConceptsIndex[d.CONCEPT_ID] == 1) {
css = ' selected';
}
return '<i class="fa ' + icon + ' ' + css + '"></i>';
},
orderable: false,
searchable: false
}, {
title: 'Id',
data: 'CONCEPT_ID'
}, {
title: 'Code',
data: 'CONCEPT_CODE'
}, {
title: 'Name',
data: 'CONCEPT_NAME',
render: function (s, p, d) {
var valid = d.INVALID_REASON_CAPTION == 'Invalid' ? 'invalid' : '';
return '<a class="' + valid + '" href=\"#/concept/' + d.CONCEPT_ID + '\">' + d.CONCEPT_NAME + '</a>';
}
}, {
title: 'Class',
data: 'CONCEPT_CLASS_ID'
}, {
title: 'Standard Concept Caption',
data: 'STANDARD_CONCEPT_CAPTION',
visible: false
}, {
title: 'Domain',
data: 'DOMAIN_ID'
}, {
title: 'Vocabulary',
data: 'VOCABULARY_ID'
}];
self.relatedSourcecodesOptions = {
Facets: [{
'caption': 'Vocabulary',
'binding': function (o) {
return o.VOCABULARY_ID;
}
}, {
'caption': 'Invalid Reason',
'binding': function (o) {
return o.INVALID_REASON_CAPTION;
}
}, {
'caption': 'Class',
'binding': function (o) {
return o.CONCEPT_CLASS_ID;
}
}, {
'caption': 'Domain',
'binding': function (o) {
return o.DOMAIN_ID;
}
}]
};
self.metatrix = {
'ICD9CM.5-dig billing code': {
childRelationships: [{
name: 'Subsumes',
range: [0, 1]
}],
parentRelationships: [{
name: 'Is a',
range: [0, 1]
}]
},
'ICD9CM.4-dig nonbill code': {
childRelationships: [{
name: 'Subsumes',
range: [0, 1]
}],
parentRelationships: [{
name: 'Is a',
range: [0, 1]
}, {
name: 'Non-standard to Standard map (OMOP)',
range: [0, 1]
}]
},
'ICD9CM.3-dig nonbill code': {
childRelationships: [{
name: 'Subsumes',
range: [0, 1]
}],
parentRelationships: [{
name: 'Non-standard to Standard map (OMOP)',
range: [0, 999]
}]
},
'RxNorm.Ingredient': {
childRelationships: [{
name: 'Ingredient of (RxNorm)',
range: [0, 999]
}],
parentRelationships: [{
name: 'Has inferred drug class (OMOP)',
range: [0, 999]
}]
},
'RxNorm.Brand Name': {
childRelationships: [{
name: 'Ingredient of (RxNorm)',
range: [0, 999]
}],
parentRelationships: [{
name: 'Tradename of (RxNorm)',
range: [0, 999]
}]
},
'RxNorm.Branded Drug': {
childRelationships: [{
name: 'Consists of (RxNorm)',
range: [0, 999]
}],
parentRelationships: [{
name: 'Has ingredient (RxNorm)',
range: [0, 999]
}, {
name: 'RxNorm to ATC (RxNorm)',
range: [0, 999]
}, {
name: 'RxNorm to ETC (FDB)',
range: [0, 999]
}]
},
'RxNorm.Clinical Drug Comp': {
childRelationships: [],
parentRelationships: [{
name: 'Has precise ingredient (RxNorm)',
range: [0, 999]
}, {
name: 'Has ingredient (RxNorm)',
range: [0, 999]
}]
},
'CPT4.CPT4': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
},
'CPT4.CPT4 Hierarchy': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
},
'ETC.ETC': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
},
'MedDRA.LLT': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
},
'MedDRA.PT': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
},
'MedDRA.HLT': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
},
'MedDRA.SOC': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
},
'MedDRA.HLGT': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
},
'SNOMED.Clinical Finding': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
},
'SNOMED.Procedure': {
childRelationships: [{
name: 'Has descendant of',
range: [0, 1]
}],
parentRelationships: [{
name: 'Has ancestor of',
range: [0, 1]
}]
}
};
self.hasRelationship = function (concept, relationships) {
for (var r = 0; r < concept.RELATIONSHIPS.length; r++) {
for (var i = 0; i < relationships.length; i++) {
if (concept.RELATIONSHIPS[r].RELATIONSHIP_NAME == relationships[i].name) {
if (concept.RELATIONSHIPS[r].RELATIONSHIP_DISTANCE >= relationships[i].range[0] && concept.RELATIONSHIPS[r].RELATIONSHIP_DISTANCE <= relationships[i].range[1]) {
return true;
}
}
}
}
return false;
}
self.meetsRequirements = function (concept, requirements) {
var passCount = 0;
for (var r = 0; r < requirements.length; r++) {
for (var f = 0; f < this.fe.Facets.length; f++) {
if (this.fe.Facets[f].caption == requirements[r].c) {
for (var m = 0; m < this.fe.Facets[f].Members.length; m++) {
if (this.fe.Facets[f].Members[m].Name == requirements[r].n) {
passCount++;
}
}
}
}
}
if (filters.length == requirements.length) {
return true;
} else {
return false;
}
}
self.contextSensitiveLinkColor = function (row, data) {
var switchContext;
if (data.STANDARD_CONCEPT == undefined) {
switchContext = data.concept.STANDARD_CONCEPT;
} else {
switchContext = data.STANDARD_CONCEPT;
}
switch (switchContext) {
case 'N':
$('a', row).css('color', '#a71a19');
break;
case 'C':
$('a', row).css('color', '#a335ee');
break;
}
}
self.hasCDM = function (source) {
for (var d = 0; d < source.daimons.length; d++) {
if (source.daimons[d].daimonType == 'CDM') {
return true;
}
}
return false;
}
self.hasResults = function (source) {
for (var d = 0; d < source.daimons.length; d++) {
if (source.daimons[d].daimonType == 'Results') {
return true;
}
}
return false;
}
self.renderConceptSetItemSelector = function (s, p, d) {
var css = '';
if (self.selectedConceptsIndex[d.concept.CONCEPT_ID] == 1) {
css = ' selected';
}
return '<i class="fa fa-shopping-cart' + css + '"></i>';
}
self.renderLink = function (s, p, d) {
var valid = d.INVALID_REASON_CAPTION == 'Invalid' ? 'invalid' : '';
return '<a class="' + valid + '" href=\"#/concept/' + d.CONCEPT_ID + '\">' + d.CONCEPT_NAME + '</a>';
}
self.renderBoundLink = function (s, p, d) {
return '<a href=\"#/concept/' + d.concept.CONCEPT_ID + '\">' + d.concept.CONCEPT_NAME + '</a>';
}
// for the current selected concepts:
// update the export panel
// resolve the included concepts and update the include concept set identifier list
self.resolveConceptSetExpression = function () {
self.resolvingConceptSetExpression(true);
var conceptSetExpression = '{"items" :' + ko.toJSON(self.selectedConcepts()) + '}';
var highlightedJson = self.syntaxHighlight(conceptSetExpression);
self.currentConceptSetExpressionJson(highlightedJson);
var conceptIdentifierList = [];
for (var i = 0; i < self.selectedConcepts().length; i++) {
conceptIdentifierList.push(self.selectedConcepts()[i].concept.CONCEPT_ID);
}
self.currentConceptIdentifierList(conceptIdentifierList.join(','));
var resolvingPromise = $.ajax({
url: self.vocabularyUrl() + 'resolveConceptSetExpression',
data: conceptSetExpression,
method: 'POST',
contentType: 'application/json',
success: function (info) {
var identifiers = info;
self.conceptSetInclusionIdentifiers(info);
self.currentIncludedConceptIdentifierList(info.join(','));
self.conceptSetInclusionCount(info.length);
self.resolvingConceptSetExpression(false);
},
error: function (err) {
self.currentView('configure');
self.resolvingConceptSetExpression(false);
}
});
return resolvingPromise;
};
self.resolveConceptSetExpressionSimple = function(expression, success) {
var resolvingPromise = $.ajax({
url: self.vocabularyUrl() + 'resolveConceptSetExpression',
data: expression,
method: 'POST',
contentType: 'application/json',
success: success || function (info) {
var identifiers = info;
self.conceptSetInclusionIdentifiers(info);
self.currentIncludedConceptIdentifierList(info.join(','));
self.conceptSetInclusionCount(info.length);
self.resolvingConceptSetExpression(false);
},
error: function (err) {
self.currentView('configure');
self.resolvingConceptSetExpression(false);
}
});
return resolvingPromise;
};
self.renderCheckbox = function (field) {
return '<span data-bind="click: function(d) { d.' + field + '(!d.' + field + '()); pageModel.resolveConceptSetExpression(); } ,css: { selected: ' + field + '} " class="fa fa-check"></span>';
}
self.enableRecordCounts = ko.observable(true);
self.loadingIncluded = ko.observable(false);
self.loadingSourcecodes = ko.observable(false);
self.loadingRelated = ko.observable(false);
self.loadingEvidence = ko.observable(false);
self.loadingReport = ko.observable(false);
self.loadingReportDrilldown = ko.observable(false);
self.activeReportDrilldown = ko.observable(false);
self.criteriaContext = ko.observable();
self.cohortAnalyses = ko.observableArray();
self.currentReport = ko.observable();
// TODO: This object array was lifted from Heracles to capture the
// various analysis "packages" to use when viewing. This information should be relocated
// to the database and be made available through the WebAPI.
self.visualizationPacks = ko.observableArray([{
name: "Care Site",
reportKey: null,
analyses: [1200, 1201]
}, {
name: "Cohort Specific",
reportKey: 'Cohort Specific',
analyses: [1700, 1800, 1801, 1802, 1803, 1804, 1805, 1806, 1807, 1808, 1809, 1810, 1811, 1812, 1813, 1814, 1815, 1816, 1820, 1821, 1830, 1831, 1840, 1841, 1850, 1851, 1860, 1861, 1870, 1871, 116, 117, 1]
}, {
name: "Condition",
reportKey: 'Condition',
analyses: [116, 117, 400, 401, 402, 404, 405, 406, 1]
}, {
name: "Condition Eras",
reportKey: 'Condition Eras',
analyses: [1001, 1000, 1007, 1006, 1004, 1002, 116, 117, 1]
}, {
name: "Conditions by Index",
reportKey: 'Conditions by Index',
analyses: [1700, 1800, 1801, 1802, 1803, 1804, 1805, 1806, 1807, 1808, 1809, 1810, 1811, 1812, 1813, 1814, 1815, 1816, 1820, 1821, 1830, 1831, 1840, 1841, 1850, 1851, 1860, 1861, 1870, 1871, 116, 117, 1]
}, {
name: "Data Density",
reportKey: null,
analyses: [117, 220, 420, 502, 620, 720, 820, 920, 1020, 111, 403, 603, 703, 803, 903, 1003]
}, {
name: "Death",
reportKey: 'Death',
analyses: [501, 506, 505, 504, 502, 116, 117]
}, {
name: "Default",
reportKey: null,
analyses: [1, 2, 101, 108, 110]
}, {
name: "Drug Eras",
reportKey: 'Drug Eras',
analyses: [900, 901, 907, 906, 904, 902, 116, 117, 1]
}, {
name: "Drug Exposure",
reportKey: 'Drug Exposure',
analyses: [700, 701, 706, 715, 705, 704, 116, 702, 117, 717, 716, 1]
}, {
name: "Drugs by Index",
reportKey: 'Drugs by Index',
analyses: [1700, 1800, 1801, 1802, 1803, 1804, 1805, 1806, 1807, 1808, 1809, 1810, 1811, 1812, 1813, 1814, 1815, 1816, 1820, 1821, 1830, 1831, 1840, 1841, 1850, 1851, 1860, 1861, 1870, 1871, 116, 117, 1]
}, {
name: "Heracles Heel",
reportKey: null,
analyses: [7, 8, 9, 114, 115, 207, 208, 209, 210, 302, 409, 410, 411, 412, 413, 509, 510, 609, 610, 612, 613, 709, 710, 711, 712, 713, 809, 810, 812, 813, 814, 908, 909, 910, 1008, 1009, 1010, 1415, 1500, 1501, 1600, 1601, 1701, 103, 105, 206, 406, 506, 606, 706, 715, 716, 717, 806, 906, 907, 1006, 1007, 1502, 1503, 1504, 1505, 1506, 1507, 1508, 1509, 1510, 1511, 1602, 1603, 1604, 1605, 1606, 1607, 1608, 511, 512, 513, 514, 515, 2, 4, 5, 200, 301, 400, 500, 505, 600, 700, 800, 900, 1000, 1609, 1610, 405, 605, 705, 805, 202, 3, 101, 420, 620, 720, 820, 920, 1020, 402, 602, 702, 802, 902, 1002, 1310, 1309, 1312, 1313, 1314]
}, {
name: "Location",
reportKey: null,
analyses: [1100, 1101]
}, {
name: "Measurement",
reportKey: null,
analyses: [1300, 1301, 1303, 1306, 1305, 1315, 1304, 1316, 1302, 1307, 1317, 1318, 1320, 117, 116, 1]
}, {
name: "Observation",
reportKey: null,
analyses: [800, 801, 806, 805, 815, 804, 802, 807, 816, 817, 818, 117, 116, 102, 112, 1]
}, {
name: "Observation Periods",
reportKey: 'Observation Periods',
analyses: [101, 104, 106, 107, 108, 109, 110, 113, 1]
}, {
name: "Person",
reportKey: 'Person',
analyses: [0, 1, 2, 3, 4, 5]
}, {
name: "Procedure",
reportKey: 'Procedure',
analyses: [606, 604, 116, 602, 117, 605, 600, 601, 1]
}, {
name: "Procedures by Index",
reportKey: 'Procedures by Index',
analyses: [1700, 1800, 1801, 1802, 1803, 1804, 1805, 1806, 1807, 1808, 1809, 1810, 1811, 1812, 1813, 1814, 1815, 1816, 1820, 1821, 1830, 1831, 1840, 1841, 1850, 1851, 1860, 1861, 1870, 1871, 116, 117, 1]
}, {
name: "Visit",
reportKey: null,
analyses: [202, 203, 206, 204, 116, 117, 211, 200, 201, 1]
}]);
/*
self.reports = ko.observableArray([
'Person',
'Cohort Specific',
'Condition Eras',
'Conditions by Index',
'Drugs by Index',
'Procedures by Index',
'Observation Periods',
'Condition',
'Drug Eras',
'Drug Exposure',
'Procedure',
'Death'
]);
*/
// The reports available are defined as part of the visualizationPacks() definition above
self.reports = ko.observableArray(self.visualizationPacks().map(function (item) {
return item.reportKey
}).filter(function (n) {
return n != undefined
}).sort());
self.getSourceInfo = function (source) {
var info = self.currentCohortDefinitionInfo();
for (var i = 0; i < info.length; i++) {
if (info[i].id.sourceId == source.sourceId) {