From 5e08ded984cb278e60347a1adc7273199e4a3b1a Mon Sep 17 00:00:00 2001
From: "Brian P. Walenz" <thebri@gmail.com>
Date: Thu, 27 Sep 2018 03:36:40 -0400
Subject: [PATCH] Allow wildcard in -R: '-R *fasta'.

---
 src/haplotyping/splitHaplotype.C | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/haplotyping/splitHaplotype.C b/src/haplotyping/splitHaplotype.C
index 3701f1766..abe6b59b1 100644
--- a/src/haplotyping/splitHaplotype.C
+++ b/src/haplotyping/splitHaplotype.C
@@ -637,7 +637,8 @@ main(int argc, char **argv) {
       decodeRange(argv[++arg], G->_idMin, G->_idMax);
 
     } else if (strcmp(argv[arg], "-R") == 0) {
-      G->_seqs.push(new dnaSeqFile(argv[++arg]));
+      while ((arg < argc) && (fileExists(argv[arg+1])))
+        G->_seqs.push(new dnaSeqFile(argv[++arg]));
 
     } else if (strcmp(argv[arg], "-H") == 0) {   //  HAPLOTYPE SPECIFICATION
       G->_haps.push_back(new hapData(argv[++arg]));