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API Documentation

The documentation website is currently hosted on https://chanzuckerberg.github.io/cellxgene-census/.

The documentation site is rebuilt each time a tag is created on the repo, which happens on release, including regenerating the Sphinx Python API docs. The R pkgdown website is checked into git and simply copied in during the doc site rebuild; see api/r/cellxgene.census/vignettes_/ for further explanation.

A docsite rebuild can be triggered manually through workflow_dispatch (Run workflow). This should be done if a bug in the documentation is found and a release is not necessary.

In order to test docsite changes locally, first install the necessary requirements:

pip install -r docs/requirements.txt
brew install pandoc # Mac OS

Then,

And then run the following command:

cd docs
make html

The generated docsite will then be found at docs/_build/html/index.html.