GATK 4 Mutect2 Somático
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Updated
Nov 12, 2022 - Shell
GATK 4 Mutect2 Somático
Nextflow pipeline for Mutect2 somatic variant calling best practices
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
A Snakemake pipeline for copy number variant calling without normal tissue samples
demo pipeline for testing different data chunking methods for MuTect2
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
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