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Commits on Aug 3, 2020

• Add code of conduct

  andersgs

  authored
  523d975

Commits on Mar 16, 2020

• make tree height auto

  tseemann

  committed
  38dbb78

Commits on Feb 24, 2020

• Issue #256 - fix kraken tar/folder mismatch

  tseemann

  committed
  b50b0f1

Commits on Feb 21, 2020

• Now works in brew

  tseemann

  committed
  e3df553

Commits on Oct 13, 2019

• Issue #205 | add new fast yield to preview mode

  tseemann

  committed
  041ded1

• Issue #125 | improved logging for new fq

  tseemann

  committed
  e4bc111

• Issue #125 | use 'seqtk' in the 'fq' command

  tseemann

  committed
  7f4bd88

• Don't use -alrt in iqtree.sh

  tseemann

  committed
  ce2178f

• Issue #239 | add mash dist matrix to preview mode

  tseemann

  committed
  2256393

• Issue #197 | keep copy of --input in --outdir/input.tab

  tseemann

  committed
  3d75d24

• Bug: don't remove mlst.tab in 'again'

  tseemann

  committed
  12abca2

• Issue #203 | new --link-cmd for Windows/CIFS users

  tseemann

  committed
  0170722

• Issue #238 | fix Database report

  tseemann

  committed
  5e11d97

• Issue #236 again | remove new files in 'again'

  tseemann

  committed
  c384d9a

Commits on Oct 7, 2019

• Issue #168 | add -fconst to IQTREE; correct branch lens

  tseemann

  committed
  a0f64b6

• Issue #236 | handle new abricate format, use --summary

  tseemann

  committed
  89a5b27

• Let abricate use >1 thread

  tseemann

  committed
  3c88c64

Commits on Oct 3, 2019

• Issue #178 | EMBOSS out, any2fasta in :-)

  tseemann

  committed
  0c0b9fe

• Issue #202 | roary2svg remove file::slurp

  tseemann

  committed
  e9147cf

• Issue #204 | improve --check version reporting

  tseemann

  committed
  c6f3fc6

• bump version to 3 oct 2019

  tseemann

  committed
  965f3f3

• Issue #209 | bug fix mlst vs MLST and --scheme/--mlst

  tseemann

  committed
  0a501e0

Commits on Oct 2, 2019

• Issue #227 | fix out of date 'make help'

  tseemann

  committed
  6f21ec1

• Issue #230 | typo in --help

  tseemann

  committed
  1ff25f6

Commits on Sep 10, 2019

• Missing sub heading

  tseemann

  committed
  499e528

• Typos in source install

  tseemann

  committed
  033b6c4

• Promote and correct conda install

  tseemann

  committed
  5ec63f6

• Correct size of Kraken2 DB

  tseemann

  committed
  c9287aa

• Add Kraken2 DB instructions

  tseemann

  committed
  22f0b45

Commits on Aug 25, 2019

• Tag a release 2.0.20190825

  tseemann

  committed
  078fd40

Commits on Oct 24, 2018

• Add NULLARBOR_CPUS env-var

  tseemann

  committed
  11b8791

Commits on Oct 23, 2018

• NEW: nullarbor to JSON command (still under dev)

  tseemann

  committed
  d561e9d

• Typo on desc of --name option

  tseemann

  committed
  b1ecb33

• Anders instructions for a raxml.sh module

  tseemann

  committed
  e53efc2

• Add --noTRNA to prokka_fast

  tseemann

  committed
  45fd202

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