A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning …

Accelerated BLAST compatible local sequence aligner.

The second version of the Kraken taxonomic sequence classification system

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

Fast genome and metagenome distance estimation using MinHash

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.

Public repository for ShapeMapper 2 releases

DNA, Amino Acid and RNA Tests

RNA secondary structure prediction incorporating experimental constraints