packages.bib

@Manual{R-DT,
  title = {DT: A Wrapper of the JavaScript Library DataTables},
  author = {Yihui Xie and Joe Cheng and Xianying Tan},
  year = {2023},
  note = {R package version 0.30},
  url = {https://github.com/rstudio/DT},
}

@Manual{R-MASS,
  title = {MASS: Support Functions and Datasets for Venables and Ripley's MASS},
  author = {Brian Ripley},
  year = {2023},
  note = {R package version 7.3-60},
  url = {http://www.stats.ox.ac.uk/pub/MASS4/},
}

@Manual{R-Matrix,
  title = {Matrix: Sparse and Dense Matrix Classes and Methods},
  author = {Douglas Bates and Martin Maechler and Mikael Jagan},
  year = {2023},
  note = {R package version 1.6-1.1},
  url = {https://Matrix.R-forge.R-project.org},
}

@Manual{R-Rcpp,
  title = {Rcpp: Seamless R and C++ Integration},
  author = {Dirk Eddelbuettel and Romain Francois and JJ Allaire and Kevin Ushey and Qiang Kou and Nathan Russell and Inaki Ucar and Douglas Bates and John Chambers},
  year = {2023},
  note = {R package version 1.0.11},
  url = {https://www.rcpp.org},
}

@Manual{R-SIN,
  title = {SIN: A SINful Approach to Selection of Gaussian Graphical Markov
Models},
  author = {Mathias Drton.},
  year = {2013},
  note = {R package version 0.6},
  url = {http://www.r-project.org},
}

@Manual{R-barsurf,
  title = {barsurf: Contour Plots, 3D Plots, Vector Fields and Heatmaps},
  author = {Abby Spurdle},
  year = {2021},
  note = {R package version 0.7.0},
  url = {https://sites.google.com/site/spurdlea/r},
}

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2023},
  url = {https://www.R-project.org/},
}


@Manual{R-bivariate,
  title = {bivariate: Bivariate Probability Distributions},
  author = {Abby Spurdle},
  year = {2021},
  note = {R package version 0.7.0},
  url = {https://sites.google.com/site/spurdlea/r},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2023},
  note = {R package version 0.36},
  url = {https://github.com/rstudio/bookdown},
}

@Manual{R-brms,
  title = {brms: Bayesian Regression Models using Stan},
  author = {Paul-Christian Bürkner},
  year = {2023},
  note = {R package version 2.20.4},
  url = {https://github.com/paul-buerkner/brms},
}

@Manual{R-car,
  title = {car: Companion to Applied Regression},
  author = {John Fox and Sanford Weisberg and Brad Price},
  year = {2023},
  note = {R package version 3.1-2},
  url = {https://r-forge.r-project.org/projects/car/},
}

@Manual{R-carData,
  title = {carData: Companion to Applied Regression Data Sets},
  author = {John Fox and Sanford Weisberg and Brad Price},
  year = {2022},
  note = {R package version 3.0-5},
  url = {https://r-forge.r-project.org/projects/car/},
}

@Manual{R-designr,
  title = {designr: Balanced Factorial Designs},
  author = {Maximilian M. Rabe and Reinhold Kliegl and Daniel J. Schad},
  year = {2023},
  note = {R package version 0.1.13},
  url = {https://maxrabe.com/designr},
}


@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
  year = {2023},
  note = {R package version 1.1.3},
  url = {https://dplyr.tidyverse.org},
}

@Manual{R-extraDistr,
  title = {extraDistr: Additional Univariate and Multivariate Distributions},
  author = {Tymoteusz Wolodzko},
  year = {2020},
  note = {R package version 1.9.1},
  url = {https://github.com/twolodzko/extraDistr},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.0.0},
  url = {https://forcats.tidyverse.org/},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2023},
  note = {R package version 3.4.4},
  url = {https://ggplot2.tidyverse.org},
}

@Manual{R-htmlwidgets,
  title = {htmlwidgets: HTML Widgets for R},
  author = {Ramnath Vaidyanathan and Yihui Xie and JJ Allaire and Joe Cheng and Carson Sievert and Kenton Russell},
  year = {2023},
  note = {R package version 1.6.2},
  url = {https://github.com/ramnathv/htmlwidgets},
}

@Manual{R-hypr,
  title = {hypr: Hypothesis Matrix Translation},
  author = {Maximilian M. Rabe and Shravan Vasishth and Sven Hohenstein and Reinhold Kliegl and Daniel J. Schad},
  year = {2023},
  note = {R package version 0.2.7},
  url = {https://maxrabe.com/hypr},
}

@Manual{R-intoo,
  title = {intoo: Minimal Language-Like Extensions},
  author = {Abby Spurdle and Emil Bode},
  year = {2020},
  note = {R package version 0.4.0},
  url = {https://sites.google.com/site/spurdlea/r},
}

@Manual{R-kableExtra,
  title = {kableExtra: Construct Complex Table with kable and Pipe Syntax},
  author = {Hao Zhu},
  year = {2021},
  note = {R package version 1.3.4},
  url = {http://haozhu233.github.io/kableExtra/},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2023},
  note = {R package version 1.44},
  url = {https://yihui.org/knitr/},
}


@Manual{R-lattice,
  title = {lattice: Trellis Graphics for R},
  author = {Deepayan Sarkar},
  year = {2023},
  note = {R package version 0.21-9},
  url = {https://lattice.r-forge.r-project.org/},
}


@Manual{R-lme4,
  title = {lme4: Linear Mixed-Effects Models using Eigen and S4},
  author = {Douglas Bates and Martin Maechler and Ben Bolker and Steven Walker},
  year = {2023},
  note = {R package version 1.1-34},
  url = {https://github.com/lme4/lme4/},
}

@Manual{R-lubridate,
  title = {lubridate: Make Dealing with Dates a Little Easier},
  author = {Vitalie Spinu and Garrett Grolemund and Hadley Wickham},
  year = {2023},
  note = {R package version 1.9.3},
  url = {https://lubridate.tidyverse.org},
}


@Manual{R-papaja,
  title = {papaja: Prepare American Psychological Association Journal Articles with
R Markdown},
  author = {Frederik Aust and Marius Barth},
  year = {2023},
  note = {R package version 0.1.2},
  url = {https://github.com/crsh/papaja},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Hadley Wickham and Lionel Henry},
  year = {2023},
  note = {R package version 1.0.2},
  url = {https://purrr.tidyverse.org/},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
  year = {2023},
  note = {R package version 2.1.4},
  url = {https://readr.tidyverse.org},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2023},
  note = {R package version 2.25},
  url = {https://github.com/rstudio/rmarkdown},
}

@Manual{R-rstatix,
  title = {rstatix: Pipe-Friendly Framework for Basic Statistical Tests},
  author = {Alboukadel Kassambara},
  year = {2023},
  note = {R package version 0.7.2},
  url = {https://rpkgs.datanovia.com/rstatix/},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2022},
  note = {R package version 1.5.0},
  url = {https://stringr.tidyverse.org},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2023},
  note = {R package version 3.2.1},
  url = {https://tibble.tidyverse.org/},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
  year = {2023},
  note = {R package version 1.3.0},
  url = {https://tidyr.tidyverse.org},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 2.0.0},
  url = {https://tidyverse.tidyverse.org},
}

@Manual{R-tinylabels,
  title = {tinylabels: Lightweight Variable Labels},
  author = {Marius Barth},
  year = {2023},
  note = {R package version 0.2.4},
  url = {https://github.com/mariusbarth/tinylabels},
}

@Manual{R-webshot,
  title = {webshot: Take Screenshots of Web Pages},
  author = {Winston Chang},
  year = {2023},
  note = {R package version 0.5.5},
  url = {https://wch.github.io/webshot/},
}

@Book{MASS2002,
  title = {Modern Applied Statistics with S},
  author = {W. N. Venables and B. D. Ripley},
  publisher = {Springer},
  edition = {Fourth},
  address = {New York},
  year = {2002},
  note = {ISBN 0-387-95457-0},
  url = {https://www.stats.ox.ac.uk/pub/MASS4/},
}

@Article{Rcpp2011,
  title = {{Rcpp}: Seamless {R} and {C++} Integration},
  author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {8},
  pages = {1--18},
  doi = {10.18637/jss.v040.i08},
}

@Book{Rcpp2013,
  title = {Seamless {R} and {C++} Integration with {Rcpp}},
  author = {Dirk Eddelbuettel},
  publisher = {Springer},
  address = {New York},
  year = {2013},
  note = {ISBN 978-1-4614-6867-7},
  doi = {10.1007/978-1-4614-6868-4},
}

@Article{Rcpp2018,
  title = {{Extending {R} with {C++}: A Brief Introduction to {Rcpp}}},
  author = {Dirk Eddelbuettel and James Joseph Balamuta},
  journal = {The American Statistician},
  year = {2018},
  volume = {72},
  number = {1},
  pages = {28-36},
  doi = {10.1080/00031305.2017.1375990},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  isbn = {978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Article{brms2017,
  title = {{brms}: An {R} Package for {Bayesian} Multilevel Models Using {Stan}},
  author = {Paul-Christian Bürkner},
  journal = {Journal of Statistical Software},
  year = {2017},
  volume = {80},
  number = {1},
  pages = {1--28},
  doi = {10.18637/jss.v080.i01},
  encoding = {UTF-8},
}

@Article{brms2018,
  title = {Advanced {Bayesian} Multilevel Modeling with the {R} Package {brms}},
  author = {Paul-Christian Bürkner},
  journal = {The R Journal},
  year = {2018},
  volume = {10},
  number = {1},
  pages = {395--411},
  doi = {10.32614/RJ-2018-017},
  encoding = {UTF-8},
}

@Article{brms2021,
  title = {Bayesian Item Response Modeling in {R} with {brms} and {Stan}},
  author = {Paul-Christian Bürkner},
  journal = {Journal of Statistical Software},
  year = {2021},
  volume = {100},
  number = {5},
  pages = {1--54},
  doi = {10.18637/jss.v100.i05},
  encoding = {UTF-8},
}

@Book{car2019,
  title = {An {R} Companion to Applied Regression},
  edition = {Third},
  author = {John Fox and Sanford Weisberg},
  year = {2019},
  publisher = {Sage},
  address = {Thousand Oaks {CA}},
  url = {https://socialsciences.mcmaster.ca/jfox/Books/Companion/},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Article{hypr2019,
  title = {How to capitalize on a priori contrasts in linear (mixed) models: A tutorial},
  year = {2019},
  journal = {Journal of Memory and Language},
  arxiv = {1807.10451},
  doi = {10.1016/j.jml.2019.104038},
  volume = {110},
  author = {Daniel J. Schad and Shravan Vasishth and Sven Hohenstein and Reinhold Kliegl},
}

@Article{hypr2020,
  title = {hypr: An R package for hypothesis-driven contrast coding},
  year = {2020},
  journal = {The Journal of Open Source Software},
  doi = {10.21105/joss.02134},
  volume = {5},
  number = {48},
  pages = {2134},
  author = {Maximilian M. Rabe and Shravan Vasishth and Sven Hohenstein and Reinhold Kliegl and Daniel J. Schad},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
}

@Book{lattice2008,
  title = {Lattice: Multivariate Data Visualization with R},
  author = {Deepayan Sarkar},
  year = {2008},
  publisher = {Springer},
  address = {New York},
  isbn = {978-0-387-75968-5},
  url = {http://lmdvr.r-forge.r-project.org},
}

@Article{lme42015,
  title = {Fitting Linear Mixed-Effects Models Using {lme4}},
  author = {Douglas Bates and Martin M{\"a}chler and Ben Bolker and Steve Walker},
  journal = {Journal of Statistical Software},
  year = {2015},
  volume = {67},
  number = {1},
  pages = {1--48},
  doi = {10.18637/jss.v067.i01},
}

@Article{lubridate2011,
  title = {Dates and Times Made Easy with {lubridate}},
  author = {Garrett Grolemund and Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {3},
  pages = {1--25},
  url = {https://www.jstatsoft.org/v40/i03/},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  isbn = {9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  isbn = {9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}