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Versions

v0.1

Convert PERSON table using ETL here https://github.com/MIT-LCP/mimic-omop/blob/master/etl/StandardizedClinicalDataTables/PERSON/etl.sql

Source

Full

https://physionet.org/content/mimiciii/1.4/

Demo

(but probably also via restricted access) (MIT's decision)

Options

Cloud GBC

  • preferred
  • notes below
  • use prefix physionet-data.mimiciii_clinical
  • literals - not in quotes
  • WITH constructs works OK
  • replace mimic_id with subject_id

Files

  • get gzipped files (6+GB) and use local Postgres
  • no need to modify the ETL

AWS

  • link worked, can see the data, may need some free credit