Preset meta-large uses --min-count 1

[mdehollander]

The preset meta-large uses the option --min-count 1, in contrast to the default --min-count 2:

megahit/src/megahit

Line 500 in 36f5d45

opt.min_count = 1

This is not mentioned in the help message:

megahit/src/megahit

Line 81 in 36f5d45

meta-large: '--k-min 27 --k-max 127 --k-step 10'

[slambrechts]

I also noticed this, and wonder why? Wouldn't complex metagenomes benefit from a higher --min-count setting? Or is this not as straightforward, because complex metagenomes might contain both organisms that are present at very high coverage and at low coverage?