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Megahit not running [Errno 2] #378

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mrxuzj opened this issue Sep 18, 2024 · 0 comments
Open

Megahit not running [Errno 2] #378

mrxuzj opened this issue Sep 18, 2024 · 0 comments

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@mrxuzj
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mrxuzj commented Sep 18, 2024

Hi,

I am trying to run megahit on a linux server using gz-compressed files, but it gives me the error message below.

2024-09-12 16:41:56 - MEGAHIT v1.2.9
2024-09-12 16:41:56 - Using megahit_core with POPCNT and BMI2 support
Traceback (most recent call last):
File "/home/ubuntu-23/miniconda3/bin/megahit", line 1038, in
main()
File "/home/ubuntu-23/miniconda3/bin/megahit", line 988, in main
build_library()
File "/home/ubuntu-23/miniconda3/bin/megahit", line 264, in checked_or_call
func(*args, **kwargs)
File "/home/ubuntu-23/miniconda3/bin/megahit", line 723, in build_library
create_fifo('pe1', i, inpipe_cmd(opt.pe1[i]))
File "/home/ubuntu-23/miniconda3/bin/megahit", line 710, in create_fifo
os.mkfifo(fifo_path)
FileNotFoundError: [Errno 2] No such file or directory

Any idea what might be worng?
Thanks a lot,
Xu

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