Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Mar 2, 2022

• Fixed CAMI-challenge#129, deactivated automatic NCBI update, has to be done manually again

  AlphaSquad

  committed
  001a339

  Copy full SHA for 001a339

Commits on Jan 5, 2022

• fixed distribution_file_paths option having the wrong format ( CAMI-challenge#126 )

  AlphaSquad

  committed
  b4e2b33

  Copy full SHA for b4e2b33

Commits on Dec 13, 2021

• Removed superfluous patch

  AlphaSquad

  committed
  e3f921c

  Copy full SHA for e3f921c

• Merged python3 into master, fixing CAMI-challenge#93 and CAMI-challenge#120

  AlphaSquad

  committed
  900897e

  Copy full SHA for 900897e

• Merge pull request CAMI-challenge#88 from KatSteinke/master

  Show description for 97e94d2
  AlphaSquad

  authored
  97e94d2

  Copy full SHA for 97e94d2

• Updated docker for python3

  AlphaSquad

  committed
  231a9dd

  Copy full SHA for 231a9dd

Commits on Sep 15, 2021

• temporarily disabled CIGAR creation for bam files due to NanoSim errors

  AlphaSquad

  committed
  03cb3e5

  Copy full SHA for 03cb3e5

Commits on Jul 14, 2021

• Fixed some more problems with Nanosim/Nanosim3

  AlphaSquad

  committed
  26ad7e3

  Copy full SHA for 26ad7e3

Commits on Jul 6, 2021

• Fixed a few bugs in NanoSim output conversion

  AlphaSquad

  committed
  0a164b4

  Copy full SHA for 0a164b4

Commits on Jul 5, 2021

• Added structure for latest Nanosim

  AlphaSquad

  committed
  3dab265

  Copy full SHA for 3dab265

Commits on Mar 30, 2021

• Merge branch 'master' into python3

  AlphaSquad

  committed
  836f559

  Copy full SHA for 836f559

• Added check for empty ranks in lineage

  AlphaSquad

  committed
  f2f1623

  Copy full SHA for f2f1623

• Removed problematic legacy code

  AlphaSquad

  committed
  0322fb6

  Copy full SHA for 0322fb6

Commits on Mar 5, 2021

• Added automatic database update (fixing CAMI-challenge#87 ?)

  AlphaSquad

  committed
  a0cc7e1

  Copy full SHA for a0cc7e1

Commits on Feb 18, 2021

• readsimulationwrapper: allow arbitrary path for custom error profile

  KatSteinke

  committed
  c54284e

  Copy full SHA for c54284e

Commits on Dec 15, 2020

• Fixed wrong config file names (fixing CAMI-challenge#100)

  AlphaSquad

  committed
  71067e3

  Copy full SHA for 71067e3

Commits on Oct 5, 2020

• Removed large file

  

  AlphaSquad

  committed
  efdb1df

  Copy full SHA for efdb1df

• Switched to python3

  Show description for 32d15e0
  

  AlphaSquad

  committed
  32d15e0

  Copy full SHA for 32d15e0

Commits on Sep 11, 2020

• "Dirty" fix of CAMI-challenge#87

  AlphaSquad

  committed
  04c47a7

  Copy full SHA for 04c47a7

• Hotfix, hopefully fixes CAMI-challenge#87

  AlphaSquad

  committed
  63bcb36

  Copy full SHA for 63bcb36

Commits on Sep 10, 2020

• readsimulationwrapper: sanity check profile filename

  KatSteinke

  committed
  b6dd9a4

  Copy full SHA for b6dd9a4

• default_config: add parameters for custom profile

  KatSteinke

  committed
  bf12972

  Copy full SHA for bf12972

Commits on Sep 4, 2020

• scripts.configfilehandler: fix type of custom read length parameter

  KatSteinke

  committed
  7ba0324

  Copy full SHA for 7ba0324

Commits on Sep 3, 2020

• metagenomesimulation: run ART with parameters related to custom error profiles

  KatSteinke

  committed
  ee719e0

  Copy full SHA for ee719e0

• scripts.configfilehandler: check for custom ART error profile parameters

  KatSteinke

  committed
  bc571a0

  Copy full SHA for bc571a0

• scripts.defaultvalues: accommodate custom ART error profile options

  KatSteinke

  committed
  612fbcc

  Copy full SHA for 612fbcc

• readsimulationwrapper: handle custom read profiles in ReadSimulationArt

  KatSteinke

  committed
  917e1dc

  Copy full SHA for 917e1dc

Commits on Jun 4, 2020

• Merge pull request CAMI-challenge#66 from CAMI-challenge/dev

  Show description for 34221ca
  AlphaSquad

  authored
  34221ca

  Copy full SHA for 34221ca

Commits on Oct 29, 2019

• Hotfix: incompatibility of non-anonymous non-compressed, fixing CAMI-challenge#70

  AlphaSquad

  committed
  2dc9957

  Copy full SHA for 2dc9957

Commits on Sep 5, 2019

• retab and dont write 0-abundance sequences in profile

  AlphaSquad

  committed
  743def7

  Copy full SHA for 743def7

• Fixed genomes with 0 abundance being written

  AlphaSquad

  committed
  0bd63a9

  Copy full SHA for 0bd63a9

• Fixed skipping of non-existant ranks in taxonomy

  AlphaSquad

  committed
  4796fb4

  Copy full SHA for 4796fb4

• Merge branch 'master' into dev

  AlphaSquad

  committed
  df1c2e4

  Copy full SHA for df1c2e4

Commits on May 2, 2019

• Hotfix: wgsim sam creation for multi-fasta

  AlphaSquad

  committed
  944a232

  Copy full SHA for 944a232

Commits on Apr 15, 2019

• Hotfix: fixed non-anonymized binning gs creation

  AlphaSquad

  committed
  76291d0

  Copy full SHA for 76291d0

Pagination

Previous

Next