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This a small four channel confocal 3D volume. The four fluorescence channels are, in order, DAPI, Phalloidin-A488, AQP2 and AQP1. The volume contains a crosssection of a glomerulus, vessels and a field of proximal tubules, putative distal convoluted tubules and collecting duct.
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|
| Filename |
Kidney_Cortex_Human.tif |
| Size |
84.1 MB |
| Modality |
Confocal |
| Dimensions (pixels) |
512x512x40 |
| Dimensions (microns) |
635.9x635.9x40 |
| Channels |
4 |
| Reference |
Woloshuk et al, Winfree et al |
| Use |
Filename |
| Objects |
XXXXXX.obx |
| Image |
XXXXX.tif |
| Image processing |
XXXXX.prc |
| Documentation |
XXXX.txt |
| Reference |
Winfree et al |
This is an image volume of a kidney biopsy collected with a cyclic multiplexed immunofluorescense approach, CODEX.
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|
| Filename |
Kidney_Cortex_Human_CODEX.tif |
| Size |
2.3 GB |
| Modality |
Widefield/CODEX |
| Dimensions (pixels) |
6592x3760x1 |
| Dimensions (microns) |
2490x1420 |
| Channels |
44 |
| Reference |
Winfree et al |
| Use |
Filename |
| Objects |
XXXXXX.obx |
| Image |
XXXXX.tif |
| Image processing |
XXXXX.prc |
| Documentation |
XXXX.txt |
| Reference |
Winfree et al |
This a large four channel confocal 3D volume orginally used to extract labeled nuclei in this publication. The four fluorescence channels are, in order, DAPI, XXXX, YYYY and ZZZZ. The volume contains a broad crosssection of the cortex and outer medulla with glomeruli, vessels, tubules and immune cells.
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|
| Filename |
Human_Kidney_Cortex_Mesoscale.tif |
| Size |
14.4 GB |
| Modality |
Confocal |
| Dimensions (pixels) |
|
| Dimensions (microns) |
|
| Channels |
4 |
| Reference |
Woloshuk et al, Winfree et al |
| Use |
Filename |
| Objects |
XXXXXX.obx |
| Image |
XXXXX.tif |
| Image processing |
XXXXX.prc |
| Documentation |
XXXX.txt |
| Reference |
Winfree et al |
This nephrectomy tissue was stained and imaged using a protocol developed for the Kidney Precision Medicine Project and published here. The eight fluorescence channels are, in order, Phalloidin-A488, THP, AQP1, MPO, CD68, CD3, Siglec-8, and DAPI.
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|
| Filename |
Kidney_Cortex_Human_Spectral_1.tif |
| Size |
1.8 GB |
| Modality |
Confocal |
| Dimensions (pixels) |
1704x3534x19 |
| Dimensions (microns) |
921x1911x19 |
| Channels |
8 |
| Reference |
Woloshuk et al, Winfree et al |
| Use |
Filename |
| Objects |
XXXXXX.obx |
| Image |
XXXXX.tif |
| Image processing |
XXXXX.prc |
| Documentation |
XXXX.txt |
| Reference |
Winfree et al |
