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Commits on Feb 27, 2025

• Merge pull request #239 from wwood/add-demo

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• demo: add more details

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Commits on Feb 26, 2025

• add demo content and walkthrough

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Commits on Jan 28, 2025

• README.md: Add citation.

  wwood

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• Merge pull request #237 from wwood/AroneyS-patch-2

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• Merge pull request #235 from wwood/update-readme

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Commits on Jan 27, 2025

• Add arxiv doi

  AroneyS

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Commits on Jan 25, 2025

• genomes_and_contigs: Improve error message for non-unique contig names.

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Commits on Jan 14, 2025

• Merge pull request #236 from wwood/AroneyS-patch-1

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• Update CITATION.cff

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Commits on Dec 18, 2024

• add "one of"

  AroneyS

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• add strobealign to dependencies

  AroneyS

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Commits on Dec 5, 2024

• Merge pull request #231 from wwood/fix-docs

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• fix skani case

  AroneyS

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• fix dereplication docs

  AroneyS

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Commits on Oct 22, 2024

• Merge pull request #225 from wwood/strobealign-aemb

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• test: Fix syntax.

  wwood

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• Cargo.toml: Downgrade htslib to 0.46.

  wwood

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• Merge branch 'main' into strobealign-aemb

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• lib: Accept u32 NM tags.

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Commits on Oct 6, 2024

• strobealign: Adjust for v4 databases.

  wwood

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• mapq filtering: Implement it.

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• filter: Towards MAPQ filtering.

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Commits on Oct 2, 2024

• test: Fix test name so osx skips.

  wwood

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• contig: Add strobealign-aemb method.

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• contig: strobealign-aemb: Initial efforts.

  wwood

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• Update test-coverm.yml

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Commits on Sep 17, 2024

• actions: osx: Skip strobealign.

  wwood

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• cargo.toml: Update deps.

  wwood

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• tests: Fix regressions.

  wwood

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• tests: test_cmdline: Use minimap2 as standard for osx action.

  wwood

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• actions: osx: Install less.

  wwood

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Commits on Jul 8, 2024

• docs: Say that supplied --reference can be gzip.

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Commits on Jun 12, 2024

• add strobealign to mappers in help (#214)

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Commits on May 23, 2024

• actions: Update to conda-incubator/setup-miniconda3.

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