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Commits on Jun 20, 2017

• Merge pull request ExpressionAnalysis#66 from wandai330/master

  Show description for bd148d4
  ExpressionAnalysis

  authored
  bd148d4

• Rollback makefile

  Show description for 12ce104
  wandai330

  authored
  12ce104

• Merge pull request ExpressionAnalysis#2 from wandai330/int-type-overflow

  Show description for 14d6c8d
  wandai330

  authored
  14d6c8d

• Some int type variable overflow

  Show description for dabfc9c
  wandai330

  authored
  dabfc9c

Commits on Jun 16, 2017

• Merge pull request ExpressionAnalysis#1 from wandai330/integer_overflow

  Show description for dac8de5
  wandai330

  authored
  dac8de5

Commits on Jun 15, 2017

• Fix int type overflow

  Show description for 28e3c8f
  wandai330

  authored
  28e3c8f

Commits on May 9, 2017

• Merge pull request ExpressionAnalysis#56 from wltrimbl/master

  Show description for e556e16
  ExpressionAnalysis

  authored
  e556e16

• Merge pull request ExpressionAnalysis#55 from wltrimbl/updatesparsehash

  Show description for ae1bb52
  ExpressionAnalysis

  authored
  ae1bb52

Commits on Apr 7, 2017

• Merge pull request ExpressionAnalysis#54 from ExpressionAnalysis/develop

  Show description for a3eb7c1
  ExpressionAnalysis

  authored
  a3eb7c1

Commits on Apr 6, 2017

• deleted object files

  

  Will Trimble

  committed
  848a290

Commits on Apr 5, 2017

• Update makefile to sparsehash-2.0.3

  

  Will Trimble

  committed
  9f48a33

• Added sparsehash 2.0.3 (6af4bcf4ded7cf270ebb190470b8854c6531fa14)

  

  Will Trimble

  committed
  ed62059

• Removed --rsyncable from gzip invokation for portablity

  

  Will Trimble

  committed
  b6455be

• Fixed bug in input parser--failed to allocate space for the null terminator

  

  Will Trimble

  committed
  261c794

• Removed sparsehash-2.0.2

  

  Will Trimble

  committed
  7690f22

Commits on Feb 2, 2017

• add -s option for barcode label in file name

  

  ExpressionAnalysis

  committed
  672c7e6

Commits on Jan 30, 2017

• 0 length read problem, fastq-mcf would stop reading the fastq file once encountering a 0 length read

  

  ExpressionAnalysis

  committed
  fca0333

Commits on Jan 26, 2017

• new options for min max and handle 0 length reads

  

  ExpressionAnalysis

  committed
  9e7f628

Commits on Feb 26, 2016

• Merge pull request ExpressionAnalysis#44 from mattnashbrowns/desubvert

  Show description for 27a4809
  ExpressionAnalysis

  committed
  27a4809

• Removed LastChangedRevision SVN magic as it will not only not work, but will prevent compilation. Updated the version numbers to the last-changed SVN revision number from the old Google Code repo.

  mattnashbrowns

  committed
  e460ca8

Commits on Oct 8, 2015

• Update README.md

  

  EA Genomic Services

  committed
  92827c4

• Create README.md

  

  EA Genomic Services

  committed
  b4417ff

Commits on Sep 25, 2014

• make varcall more tweakable

  

  earonesty

  committed
  5d0cad0

• 

  earonesty

  committed
  fb9245c

Commits on Sep 24, 2014

• fix depth filter

  

  earonesty

  committed
  722be94

Commits on Sep 18, 2014

• add fcid option

  

  earonesty

  committed
  9fb7f46

Commits on Sep 17, 2014

• fix 1 more time for RNA seq varall diversity

  

  earonesty

  committed
  e4131ee

Commits on Sep 16, 2014

• important: cap lookbehind since we're using a vector...

  Show description for 417a8f1
  

  earonesty

  committed
  417a8f1

• debug-varcall

  

  earonesty

  committed
  76701b3

• accounting?

  

  earonesty

  committed
  ee42f44

Commits on Sep 8, 2014

• 0.96 ... pretty big change to dup filter!

  

  earonesty

  committed
  302fcb9

Commits on Sep 5, 2014

• MapQ 0 on unanchored reads

  

  earonesty

  committed
  fdbe3b4

• fix dup filter... speed it up too

  

  earonesty

  committed
  d4567a1

• fix duplicate filtering...

  

  earonesty

  committed
  957b9ae

Commits on Sep 4, 2014

• max-n-pct default needs to be -1

  

  earonesty

  committed
  9135b8d

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