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Seurat v3.1.0

Test environments

  • local Ubuntu 16.04.6 and 18.04.2 installs, R 3.5.3
  • Ubuntu 16.04.6 (on travis-ci), R 3.6.1
  • macOS 10.13.3 (on travis-ci), R 3.6.1
  • Windows Server 2012 R2 (on AppVeyor), R 3.6.1 Patched
  • win-builder (oldrelease, release, devel)

R CMD check results

There were no ERRORs or WARNINGs

There were 3 NOTEs:

  • checking CRAN incoming feasibility ... NOTE Maintainer: ‘Paul Hoffman [email protected]’ Suggests or Enhances not in mainstream repositories: loomR Availability using Additional_repositories specification: loomR yes https://mojaveazure.github.io/loomR

    The package we suggest, loomR, is currently underdevelopment and not yet available on CRAN. This package is not required for core functionality of Seurat.

  • checking package dependencies ... NOTE Package suggested but not available for checking: 'loomR'

    This is a suggested package hosted on a custom repository and maintained by us (both the package and repository).

  • checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: 'loomR'

    This is a suggested package that we maintain. We have checked the cross references to ensure they link to the correct help pages.

Downstream dependencies

There are three packages that suggest Seurat: BisqueRNA, clustreen, and iCellR; this update does not impact their functionality.