This repository contains the source code used for bioinformatic analyses presented in the paper by Modic et al., 2024 "Poised PABP-RNA hubs implement signal-dependent mRNA decay in development".

AlphaFold 3 inference pipeline.

add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

Data repository for seaborn examples

RNA-seq prediction with deep convolutional neural networks.

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels

Machine learning methods for DNA sequence analysis.

Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences

Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor

Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)

scEdU-seq analysis pipeline and tools

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

2021年最新总结，推荐工程师合适读本，计算机科学，软件技术，创业，思想类，数学类，人物传记书籍

This is a repository for Suboptimization of human transcription factors 2024

A large (+2500) collection of color maps for Python

scGRO-seq analyses codes

📦 Python library for Stochastic Processes Simulation and Visualisation