Commits

Commits on May 28, 2012

Merge pull request chapmanb#42 from afgane/master
chapmanb
committedMay 28, 2012
Merge remote-tracking branch 'upstream/master'
afgane
committedMay 28, 2012
Add a custom vimrc as part of env config - the default one is hardly readable
afgane
committedMay 28, 2012
Make proFTPd conf files respect custom install dir
afgane
committedMay 28, 2012

Commits on May 25, 2012

Regularly rotate CloudMan's log file with logrotate
afgane
committedMay 25, 2012

Commits on May 23, 2012

Update custom packages with new versions: bowtie2, cufflinks, tophat, velvet, plink-seq + more
chapmanb
committedMay 23, 2012
Clean up python libraries and include StarCluster distribution
chapmanb
committedMay 23, 2012

Commits on May 22, 2012

Merge pull request chapmanb#41 from afgane/master
chapmanb
committedMay 22, 2012
Merge remote-tracking branch 'upstream/master'
afgane
committedMay 22, 2012
Add ruffus module for running computational pipelines
afgane
committedMay 22, 2012
Update nginx and nginx upload module versions; compile with debug
afgane
committedMay 22, 2012
Update ProFTP version
afgane
committedMay 22, 2012

Commits on May 11, 2012

Upgrade GATK and Picard to latest versions
chapmanb
committedMay 11, 2012

Commits on May 7, 2012

Merge pull request chapmanb#40 from afgane/master
chapmanb
committedMay 7, 2012

Commits on May 6, 2012

Merge remote-tracking branch 'upstream/master'
afgane
committedMay 6, 2012
Make the installation procedure respect existence of cloudman in main.yaml
afgane
committedMay 6, 2012

Commits on May 5, 2012

Commits on May 4, 2012

diff switches changed, all pass
agbiotec
committedMay 4, 2012
Generate custom masked genomes from standard supported genomes
chapmanb
committedMay 4, 2012

Commits on May 3, 2012

Add hook example of prepping custom masked genomes
chapmanb
committedMay 3, 2012
added test and clean methods under JCVI's Viral Cloud Resource in the
agbiotec
committedMay 3, 2012

Commits on May 2, 2012

Check for combined bedtools binary
chapmanb
committedMay 2, 2012
Fix background download URL
chapmanb
committedMay 2, 2012
Upgrade novoalign and add download target for prepped background VCF files
chapmanb
committedMay 2, 2012

Commits on Apr 24, 2012

VIGOR deployment works on both 32-bit and 64-bit platforms.
agbiotec
committedApr 24, 2012

Commits on Apr 23, 2012

Switched CLUSTALW to .deb (i386 or x64). Need to fix parsing of uname
agbiotec
committedApr 23, 2012

Commits on Apr 20, 2012

Add is_64bit flag to the env for custom checks
chapmanb
committedApr 20, 2012

Commits on Apr 18, 2012

added JCVI's cloudvigor pipeline under custom. BUG:
agbiotec
committedApr 18, 2012
Merge pull request chapmanb#37 from afgane/master
chapmanb
committedApr 18, 2012
Use ec2autorun.py from mi-deployment by default
afgane
committedApr 18, 2012
Align the ec2autorun.py script with mi-deployment
afgane
committedApr 18, 2012

Commits on Apr 17, 2012

Merge remote-tracking branch 'upstream/master'
afgane
committedApr 17, 2012