Mathematical Modeling of Infectious Disease Dynamics

Forecasting with Additive Switching of Seasonality, Trend and Exogenous Regressors

Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

Extended state-space SIR epidemiological models

The transmissibility of novel Coronavirus in the early stages of the 2019-20 outbreak in Wuhan: Exploring initial point-source exposure sizes and durations using scenario analysis

Example R and Matlab code for ML estimation with an SIR model, as well as for examining identifiability and uncertainty using the Fisher information matrix and profile likelihoods.

Fast fixed effect algorithm

Code relating to the PRSA COVID-19 modelling paper

stochastic MCMC epidemiological compartment model using Guillespie tau leap