DESCRIPTION

Package: coseq
Type: Package
Title: Co-Expression Analysis of Sequencing Data
Version: 0.99.0
Date: 2016-09-24
Author: Andrea Rau, Cathy Maugis-Rabusseau
Maintainer: Andrea Rau <andrea.rau@jouy.inra.fr>
Depends:
    R (>= 2.14.0)
Imports:
    edgeR,
    DESeq2,
    capushe,
    Rmixmod,
    e1071,
    BiocParallel,
    ggplot2 (>= 2.1.0),
    scales,
    HTSFilter,
    corrplot,
    HTSCluster (>= 2.0.8),
    gridExtra,
    RColorBrewer,
    grDevices,
    graphics,
    stats
Suggests:
    Biobase,
    knitr,
    rmarkdown
Description: Gaussian and Poisson mixture models are implemented to cluster biological
	entities (e.g., genes) from high-throughput sequencing data. Parameter estimation is
    performed using the EM algorithm and model selection criteria (to choose
	the number of clusters) are provided. 
biocViews: GeneExpression, RNASeq, Sequencing, Software
License: GPL (>=3)
LazyLoad: yes
RoxygenNote: 5.0.1
VignetteBuilder: knitr