Commit eae718b Helyaneh Ziaei-jam
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lines changed Original file line number Diff line number Diff line change @@ -129,9 +129,9 @@ def GetScore(self, sample):
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"""
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samp_idx = self .vcf_samples .index (sample )
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if self .vcf_type == trh .VcfTypes .advntr :
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- return min (self .cyvcf2_record .format ('ML' )[samp_idx ][0 ],1 )
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+ return min (self .cyvcf2_record .format ('ML' )[samp_idx ][0 ], 1 )
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elif self .vcf_type in [trh .VcfTypes .hipstr , trh .VcfTypes .gangstr ]:
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- return min (self .cyvcf2_record .format ('Q' )[samp_idx ][0 ],1 ) # Sometimes GangSTR Q is slightly more than 1
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+ return min (self .cyvcf2_record .format ('Q' )[samp_idx ][0 ], 1 ) # Sometimes GangSTR Q is slightly more than 1
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elif self .vcf_type == trh .VcfTypes .eh :
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REPCI = self .cyvcf2_record .format ('REPCI' )[samp_idx ]
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REPCN = self .cyvcf2_record .format ('REPCN' )[samp_idx ]
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