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Commits on Jun 24, 2024

• adding an option for merged hapdiff/sniffles

  yuliamostovoy

  committed
  04c0931

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Commits on May 28, 2024

• adding support for merged pbsv/sniffles

  yuliamostovoy

  committed
  2eedd11

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Commits on Dec 13, 2023

• bugfix

  yuliamostovoy

  committed
  4c4cfbd

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• fix INV SVLEN in hapdiff standardizer

  yuliamostovoy

  committed
  31d5da0

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• adding hapdiff to standardizer

  yuliamostovoy

  committed
  0f6213a

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Commits on Feb 14, 2023

• adding LRcaller format handling for pbsv, sniffles

  yuliamostovoy

  committed
  eb8175c

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Commits on Feb 7, 2023

• adding PAV to svtk standardize

  yuliamostovoy

  committed
  47aa024

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Commits on Feb 3, 2023

• updating PBSV svtk standardizer to work with merged input

  yuliamostovoy

  committed
  2b48481

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Commits on Jan 17, 2023

• fixed bug in sniffles standardizer (single-stranded BNDs were discarded)

  yuliamostovoy

  committed
  b33c777

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Commits on Jan 13, 2023

• adding sniffles2 and pbsv to svtk standardizer

  yuliamostovoy

  committed
  09bcf3b

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• adding sniffles2 and pbsv options for svtk standardizer

  yuliamostovoy

  committed
  df6e0b4

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Commits on Jan 3, 2023

• changed perSample comparison of INS calls

  yuliamostovoy

  committed
  dcfeb3e

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Commits on Dec 19, 2022

• be more permissive with baf calculation (broadinstitute#476)

  tedsharpe

  authored
  f821a87

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Commits on Dec 15, 2022

• Sz evidence qc table wdl (broadinstitute#473)

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  shadizaheri

  and

  epiercehoffman

  authored
  fbd6f61

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Commits on Dec 9, 2022

• Update docker images list, triggered by ea11963

  gatk-sv-bot

  committed
  458cc33

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• Fix a Typo colums to clumns (broadinstitute#471)

  shadizaheri

  authored
  ea11963

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Commits on Dec 6, 2022

• Update docker images list, triggered by bee92cc

  gatk-sv-bot

  committed
  c29bd85

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• A py script to combine multiple outputs of Evidence QC in one table (broadinstitute#459)

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  3 peopleauthored
  bee92cc

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Commits on Dec 1, 2022

• Create CODE_OF_CONDUCT.md (broadinstitute#467)

  VJalili

  authored
  5b57da2

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Commits on Nov 7, 2022

• Install git lfs and add tracking png and jpg files (broadinstitute#429)

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  VJalili

  authored
  65a0ea3

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Commits on Nov 4, 2022

• Add miniwdl validation to CI/CD and improve the validation results messages (broadinstitute#450)

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  VJalili

  authored
  7b97c14

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• Update docker images list, triggered by 610e109

  gatk-sv-bot

  committed
  fce58f0

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• update terra dashboard pipeline diagram to v0.26.3-beta (broadinstitute#453)

  epiercehoffman

  authored
  d1f14fb

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• GATK vcf formatting script fixes (broadinstitute#452)

  mwalker174

  authored
  610e109

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• Add VisualizeCnvs (broadinstitute#423)

  mwalker174

  authored
  a375561

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Commits on Oct 24, 2022

• Update WDLs to adhere with the miniwdl requirements (broadinstitute#448)

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  VJalili

  authored
  c5a7fd1

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Commits on Oct 17, 2022

• Update docker images list, triggered by 770425d

  gatk-sv-bot

  committed
  a237a30

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• Replace EH version with its current latest release (broadinstitute#449)

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  VJalili

  authored
  770425d

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Commits on Oct 12, 2022

• call hailmerge workflow not task, ensure womtool validation (broadinstitute#447)

  epiercehoffman

  authored
  06c13da

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• Change the default max depth of inheritance & update help. (broadinstitute#444)

  VJalili

  authored
  89a5fc5

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• Fix referencing HailMerge task instead of the workflow. (broadinstitute#445)

  VJalili

  authored
  09c618d

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Commits on Oct 11, 2022

• Create an empty timing file in case it is not created in EH. (broadinstitute#441)

  VJalili

  authored
  ed21680

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• Hook up WGD run attribute overrides (broadinstitute#442)

  mwalker174

  authored
  07b7684

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Commits on Oct 7, 2022

• Update WDLs to adhere with miniwdl validation (broadinstitute#439)

  Show description for 46c5546
  VJalili

  authored
  46c5546

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• Refactor HailMerge task to HailMergeTask. (broadinstitute#440)

  VJalili

  authored
  f0118c9

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