To compile:

g++ -O3 -o MASSPRF_preprocess MACprf.cpp PRFCluster_preprocess.cpp base.cpp -w


To run:

./MASSPRF_preprocess -p Attacin-C_DmDs_pol.fas -d Attacin-C_DmDs_div.fas >concensus_Attacin-C_MASS-PRF_seq.txt &