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【MICCAI 2022, TMI 2023】Orientation-Shared Convolution Representation Model
Logging of system sensor specific for the RPI and sending them to a MQTT broker
R library for NMR/MS analyses. Workflow includes NMR data import & preprocessing, statistical modelling (PCA, O-PLS), met ID-ing, visualisation (ggplot2, plotly).. Critical functions implemented in…
Collection of modelling algorithms for NMR & MS data, including principal components analysis (PLS), (orthogonal) partial least squares (O-PLS, PLS), non-negative least squares regression (NNLSQ). …
Open-source database for in-vivo brain MRS results
Code used in KinderSeg project: Zughayyar, I., et al. (2024). A FastSurfer Database for Age-Specific Brain Volumes in Healthy Children: A Tool for Quantifying Brain Volume Alterations in Pediatric …
Python tools for Magnetic Resonance Spectroscopy - Pulses, Simulation and Analysis
A latent text-to-image diffusion model
A simple nodejs script(s) to interact with mobilizon via command line
BIDScoin converts your source-level neuroimaging data to BIDS
Pre-trained models and utilities for deep learning on medical images in Python
A PyTorch implementation for V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation
DeepBleed: 3D Volumetric Intracranial Hemorrhage Segmentation for Clinical Trials
CONN toolbox, development version (conn-toolbox.org)
The Economist's model to estimate excess deaths to the covid-19 pandemic
Mirror of the FSL-MRS gitlab repository
Code for the paper "CEREBRUM-7T: fast and fully-volumetric brain segmentation of 7 Tesla MR volumes"
Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data
Multi-format in vivo MR spectroscopy conversion to NIFTI
The NIfTI-MRS data standard: specification, code, and example data.
LCModel MR spectroscopy analysis algorithm by Stephen Provencher. Magn Reson Med 30, 672 (1993).
Gab.ai network crawler using bs4 and headless browsers written for Computational Social Sciences Lab (USC)
Unsupervised learning model of research topics over the past 5 years relating to microbiomes
Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
Predicting MeSH Terms for Biomedical Articles