immunotherapy_scripts

Scripts for the immunotherapy response project

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
HLA_switch.py		HLA_switch.py
README.md		README.md
bam2fastq.py		bam2fastq.py
bam_clean.py		bam_clean.py
check_fastq_submits.py		check_fastq_submits.py
coclean_jobs.py		coclean_jobs.py
compareOptStrats.py		compareOptStrats.py
cram2fastq.py		cram2fastq.py
debug_fastqdump.py		debug_fastqdump.py
download_files.py		download_files.py
format_check_job_spawn.py		format_check_job_spawn.py
gather_files.py		gather_files.py
mixed_optitype_paired.py		mixed_optitype_paired.py
modified_bwa_paired.py		modified_bwa_paired.py
optitype_paired.py		optitype_paired.py
optitype_single.py		optitype_single.py
polysolver_HLAtype.py		polysolver_HLAtype.py
polysolver_submit.py		polysolver_submit.py
prefetch_submits.py		prefetch_submits.py
redo_bamclean.py		redo_bamclean.py
spot_checker.py		spot_checker.py
tumor-normal_pair_parse.py		tumor-normal_pair_parse.py
write_bwa_submits_paired.py		write_bwa_submits_paired.py
write_bwa_submits_single.py		write_bwa_submits_single.py
write_runs.py		write_runs.py

Provide feedback