Fixed errors associated to Issue CAMI-challenge#132

25280841 · May 24, 2022 · 707d884 · 707d884
1 parent 001a339
commit 707d884
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/defaults/mini_config.ini b/defaults/mini_config.ini
@@ -31,7 +31,7 @@ metadata=defaults/metadata.tsv
 id_to_genome_file=defaults/genome_to_id.tsv
 id_to_gff_file=
 genomes_total=24
-genomes_real=24
+num_real_genomes=24
 max_strains_per_otu=1
 ratio=1
 mode=differential

diff --git a/scripts/StrainSimulationWrapper/strainsimulationwrapper.py b/scripts/StrainSimulationWrapper/strainsimulationwrapper.py
@@ -456,7 +456,8 @@ def _simulate_strains(self, genome_id_to_amounts, genome_id_to_file_path_genome,
 			file_path_empty_file = self.get_full_path(tempfile.mktemp(dir=self._tmp_dir))
 			touch(file_path_empty_file)
 
-		for genome_id in genome_id_to_file_path_genome.keys():
+		genome_id_to_file_path_genome_copy = genome_id_to_file_path_genome.copy()
+		for genome_id in genome_id_to_file_path_genome_copy.keys():
 			if self._keep_original and genome_id_to_amounts[genome_id] == 1:
 				continue
 			directory_strain = self._directory_strain.format(gid=genome_id)
@@ -501,7 +502,8 @@ def _pick_random_strains(self, meta_table, genome_id_to_amounts, genome_id_to_fi
 		"""
 		assert isinstance(meta_table, MetadataTable)
 
-		for genome_id in genome_id_to_file_path_genome.keys():
+		genome_id_to_file_path_genome_copy2 = genome_id_to_file_path_genome.copy()
+		for genome_id in genome_id_to_file_path_genome_copy2.keys():
 			if self._keep_original and genome_id_to_amounts[genome_id] == 1:
 				continue
 			directory_strain = self._directory_strain.format(gid=genome_id)