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Commits on May 30, 2022

• Merge pull request CAMI-challenge#128 from fplaza/master

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• Merge pull request CAMI-challenge#135 from Ettore1024/fix-errors

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Commits on Mar 2, 2022

• Fixed CAMI-challenge#129, deactivated automatic NCBI update, has to be done manually again

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Commits on Jan 5, 2022

• fixed distribution_file_paths option having the wrong format ( CAMI-challenge#126 )

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Commits on Dec 13, 2021

• Removed superfluous patch

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• Merged python3 into master, fixing CAMI-challenge#93 and CAMI-challenge#120

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• Merge pull request CAMI-challenge#88 from KatSteinke/master

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• Updated docker for python3

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Commits on Sep 15, 2021

• temporarily disabled CIGAR creation for bam files due to NanoSim errors

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Commits on Jul 14, 2021

• Fixed some more problems with Nanosim/Nanosim3

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Commits on Jul 6, 2021

• Fixed a few bugs in NanoSim output conversion

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Commits on Jul 5, 2021

• Added structure for latest Nanosim

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Commits on Mar 30, 2021

• Merge branch 'master' into python3

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• Added check for empty ranks in lineage

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• Removed problematic legacy code

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Commits on Mar 5, 2021

• Added automatic database update (fixing CAMI-challenge#87 ?)

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Commits on Dec 15, 2020

• Fixed wrong config file names (fixing CAMI-challenge#100)

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Commits on Sep 11, 2020

• "Dirty" fix of CAMI-challenge#87

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• Hotfix, hopefully fixes CAMI-challenge#87

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Commits on Jun 4, 2020

• Merge pull request CAMI-challenge#66 from CAMI-challenge/dev

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Commits on Oct 29, 2019

• Hotfix: incompatibility of non-anonymous non-compressed, fixing CAMI-challenge#70

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Commits on Sep 5, 2019

• retab and dont write 0-abundance sequences in profile

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• Fixed genomes with 0 abundance being written

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• Fixed skipping of non-existant ranks in taxonomy

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• Merge branch 'master' into dev

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Commits on May 2, 2019

• Hotfix: wgsim sam creation for multi-fasta

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Commits on Apr 15, 2019

• Hotfix: fixed non-anonymized binning gs creation

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Commits on Mar 25, 2019

• Added exemplary data set config and options

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Commits on Mar 1, 2019

• Merge branch 'master' of https://github.com/CAMI-challenge/CAMISIM

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• Hotfix: Reuploaded 2018 ncbi taxonomy

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Commits on Feb 14, 2019

• Update README.md

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• Updated citation info

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Commits on Sep 12, 2018

• Update README.md

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Commits on Jul 30, 2018

• Added option for only running community design

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• Fixed genome fill up

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