fix: Bugs in generation proces of changelog for release. (#428)

Add information about issue tracker for package
move PyOpenGL-accelerate to optional dependency
fix typos in changelog

Readme.md

@@ -33,7 +33,7 @@ This application is designed to help biologist with segmentation based on thresh
     -   [MacOS](https://4dnucleome.cent.uw.edu.pl/PartSeg/Downloads/PartSeg-lastest-macos.zip) (build on MacOS Mojave)
 
 -   With pip:
-    -   From pypi: `pip install PartSeg[pyqt]`
+    -   From pypi: `pip install PartSeg[all]`
     -   From repository: `pip install git+https://github.com/4DNucleome/PartSeg.git`
 
 Installation troubleshooting information could be found in wiki: [wiki](https://github.com/4DNucleome/PartSeg/wiki/Instalation-troubleshoot).

build_utils/cut_changelog.py

@@ -7,7 +7,7 @@ def cut_changelog(changelog_path):
     first_found = False
     with open(changelog_path) as change:
         for line in change:
-            if line.startswith("##"):
+            if line.startswith("## "):
                 if first_found:
                     break
                 first_found = True

changelog.md

@@ -4,9 +4,9 @@
 
 ### Bug Fixes
 
--   Importing previous version of settings (#406)
+-   Importing the previous version of settings (#406)
 -   Cutting without masking data (#407)
--   Save in subdirecory in batch plan (#414)
+-   Save in subdirectory in batch plan (#414)
 -   Loading plugins for batch processing (#423)
 
 ### Features
@@ -16,7 +16,7 @@
 -   Mask create widget for napari (#395)
 -   In napari roi extraction method show information from roi extraction method (#408)
 -   Add `*[0-9].tif` button in batch processing window (#412)
--   Better lebel representation in 3d view (#418)
+-   Better label representation in 3d view (#418)
 
 ### Refactor
 
@@ -28,18 +28,18 @@
 
 -   Adding mask in Prepare Plan for batch (#383)
 -   Set proper completion mode in SearchComboBox (#384)
--   Showing warnings on error with ROI load (#385)
+-   Showing warnings on the error with ROI load (#385)
 
 ### Features
 
 -   Add CellFromNucleusFlow "Cell from nucleus flow" cell segmentation method  (#367)
--   When cutting components in PartSeg roi mask allow not masking outer data (#379)
+-   When cutting components in PartSeg ROI mask allow not masking outer data (#379)
 -   Theme selection in GUI (#381)
 -   Allow return points from ROI extraction algorithm (#382)
 -   Add measurement to get ROI annotation by name. (#386)
--   PartSeg ROI extraction algoritms as napari plugins (#387)
--   Add  Pearson, Mander's, Intensity, Spearman colocalizatiom measurements (#392)
--   Separate standalone napari settings from PartSeg embeded napari settings (#397)
+-   PartSeg ROI extraction algorithms as napari plugins (#387)
+-   Add  Pearson, Mander's, Intensity, Spearman colocalization measurements (#392)
+-   Separate standalone napari settings from PartSeg embedded napari settings (#397)
 
 ### Performance
 

setup.cfg

@@ -25,13 +25,14 @@ keywords = bioimaging, GUI
 project_urls =
     Documentation = https://partseg.readthedocs.io/en/stable/
     Source Code = https://github.com/4DNucleome/PartSeg
+    User Support = https://github.com/4DNucleome/PartSeg/issues
+    Bug Tracker = https://github.com/4DNucleome/PartSeg/issues
 
 [options]
 packages = find:
 install_requires =
     PartSegCore_compiled_backend>=0.13.11
     PartSegData==0.10.0
-    PyOpenGL-accelerate>=3.1.5
     QtAwesome>=1.0.3
     QtPy>=1.7.0
     SimpleITK>=1.1.0
@@ -87,6 +88,11 @@ napari.plugin =
     PartSeg widgets = PartSeg.plugins.napari_widgets
 
 [options.extras_require]
+accelerate =
+    PyOpenGL-accelerate>=3.1.5
+all =
+    PyOpenGL-accelerate>=3.1.5
+    PyQt5!=5.15.0,>=5.12.3
 pyqt =
     PyQt5!=5.15.0,>=5.12.3
 pyqt5 =