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brianwalenz

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Commits on Jul 7, 2022

• Update docs for canuIterationMax. Issue marbl#2142.

  brianwalenz

  committed
  2b7236f

Commits on Jun 23, 2022

• Add support for using only a portion of a read in consensus.

  brianwalenz

  committed
  a534335

Commits on Jun 20, 2022

• Free the EdlibAlignResult when backing up to a previous read (retryCandidate;).

  brianwalenz

  committed
  a711b17

• Forget loaded reads and the unitigConsensus object after we process an imported tig.

  brianwalenz

  committed
  c33aab5

Commits on Apr 27, 2022

• Fix sneaky partitioning edge cases resulting in a final small ovlSort job.

  brianwalenz

  committed
  9b4be3c

• Update meryl for minor memory leak fix.

  brianwalenz

  committed
  92b643a

• Merge verkko-consensus branch.

  brianwalenz

  committed
  762b6eb

• Fix crash in tgStoreLoad caused by empty stuffedBits.

  brianwalenz

  committed
  8e10cfc

• Fix stupidity with reserve() vs resize(); add -V support for partitioning.

  brianwalenz

  committed
  d4e4e8f

• Add splitHaplotype back to the build. Removed in 65ce518.

  brianwalenz

  committed
  b1225ab

Commits on Apr 14, 2022

• Update utility/ and seqrequester/.

  

  brianwalenz

  authored and

  skoren

  committed
  f2974cd

• Fix crash detecting cycle when both reads are not in a tig. Issue marbl#2087.

  

  brianwalenz

  authored and

  skoren

  committed
  afdf6db

• Update utility/ and seqrequester/.

  brianwalenz

  committed
  1893349

• Stop building two unused programs.

  brianwalenz

  committed
  407b1a1

• Requre C++17.

  brianwalenz

  committed
  eeb1033

Commits on Apr 7, 2022

• Fix crash detecting cycle when both reads are not in a tig. Issue marbl#2087.

  brianwalenz

  committed
  acf1427

Commits on Feb 17, 2022

• Fix memory leak in sequence storage.

  brianwalenz

  committed
  f0b1d60

Commits on Jan 12, 2022

• Update submodules to get submodule build support (in seqrequester).

  brianwalenz

  committed
  58a6f4b

Commits on Dec 1, 2021

• Fix/change output filename format, add options for maps.

  brianwalenz

  committed
  efb74aa

• Add -dumpimport option to dump layout/reads from imported packages.

  brianwalenz

  committed
  1c4691d

Commits on Nov 24, 2021

• Allow dumps of disjoint ranges.

  brianwalenz

  committed
  c5b776d

Commits on Nov 12, 2021

• Fix array resize error; fix memory leak.

  brianwalenz

  committed
  8c40b4e

Commits on Nov 11, 2021

• sort tigs again

  brianwalenz

  committed
  0a79d57

• Fix minor bugs.

  brianwalenz

  committed
  0e2fb68

Commits on Nov 10, 2021

• Allow sqCache to load reads from fasta/fastq, add layoutToPackage.

  brianwalenz

  committed
  5353e05

• Remove, TEMPORARILY, splitHaplotype from the build, due to meryl-lookup interface changes.

  brianwalenz

  committed
  65ce518

Commits on Oct 18, 2021

• Guard against OG == nullptr when called from layoutReads.

  brianwalenz

  committed
  08b0347

Commits on Sep 16, 2021

• Add .ovb as an input type; allow filtering of imported overlaps. Issue marbl#2022.

  brianwalenz

  committed
  4702e33

Commits on Sep 7, 2021

• Fix usage text. @fishercera marbl#686

  brianwalenz

  committed
  407ae11

Commits on Aug 26, 2021

• Revert IND constants changed in cb94432.

  brianwalenz

  committed
  6c41938

• Add license text.

  brianwalenz

  committed
  79f0cbd

Commits on Aug 13, 2021

• Rewrite correction memory configuration.

  brianwalenz

  committed
  dee8c6e

• Indent creation of correctReads.sh,

  brianwalenz

  committed
  5983fc3

• Simplify call to getAllowedResources().

  brianwalenz

  committed
  806081d

• Tidy up cor and cns settings.

  brianwalenz

  committed
  7332aec

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