Tools for working with genomic and high throughput sequencing data.

Office Click-to-Run Retail-to-Volume AIO

Windows inside a Docker container.

Emacs client/library for the Language Server Protocol

The Nextflow language server

Quantify and interpret divers of variation in multilevel gene expression experiments

Official code repository for GATK versions 4 and up

Eclipse Temurin™ build scripts - common across all releases/versions

Temurin 17 binaries

fastest GTF/GFF-to-BED converter chilling around

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Flipper Zero Unleashed Firmware

DuckDB is an analytical in-process SQL database management system

simplest & fastest way to transfer files between computers via WireGuard

Truly independent web browser

Steps to create a small slurm cluster with GPU enabled nodes

A guide for setting up a SLURM cluster using Ubuntu 20.04 with both CPUs and GPUS.

A terminal based graphical activity monitor inspired by gtop and vtop

Finder of Somatic Fusion Genes in RNA-seq data

data repo for fusions found in human genomes and transcriptomes

Tools for handling Unique Molecular Identifiers in NGS data sets

This is a template for all assembly projects. Please read the instructions below on how to use it.

syslog-ng is an enhanced log daemon, supporting a wide range of input and output methods: syslog, unstructured text, queueing, SQL & NoSQL.

Official home of the DB Browser for SQLite (DB4S) project. Previously known as "SQLite Database Browser" and "Database Browser for SQLite". Website at:

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Repository to host tool-specific module files for the Nextflow DSL2 community!

rrapply: revisiting base-R's rapply

A Collection of snippets for R (RLanguage) for Visual Studio Code. They will also work with the new IDE, Positron.

SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.