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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 355 152

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 24 14

Repositories

Showing 10 of 421 repositories
  • deep-neurographs Public

    A Python package that corrects split mistakes in a fragmented neuron segmentation using a graph neural network.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Mar 26, 2025
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Mar 26, 2025
  • scrattch.mapping Public

    Genearlized mapping scripts for RNA-seq and Patch-seq data

    AllenInstitute/scrattch.mapping’s past year of commit activity
    R 13 2 9 0 Updated Mar 26, 2025
  • scrattch.patchseq Public
    AllenInstitute/scrattch.patchseq’s past year of commit activity
    R 0 1 0 1 Updated Mar 25, 2025
  • scrattch.taxonomy Public

    Allen Institute Taxonomy building R package

    AllenInstitute/scrattch.taxonomy’s past year of commit activity
    HTML 1 1 9 0 Updated Mar 25, 2025
  • TEM_config Public
    AllenInstitute/TEM_config’s past year of commit activity
    0 1 1 1 Updated Mar 25, 2025
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem’s past year of commit activity
    HTML 3 3 0 0 Updated Mar 25, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 26 9 286 14 Updated Mar 26, 2025
  • patchseq_autotrace Public

    Execution of patchseq slice autotrace pipeline

    AllenInstitute/patchseq_autotrace’s past year of commit activity
    Python 0 0 0 0 Updated Mar 26, 2025
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk’s past year of commit activity
    Python 287 BSD-3-Clause 92 61 9 Updated Mar 25, 2025
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