Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
Python 6
Repositories
- aind-beh-ephys-analysis Public
AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity - aind-eye-tracking-pipeline Public
AllenNeuralDynamics/aind-eye-tracking-pipeline’s past year of commit activity - aind-software-docs Public
Centralized documentation repository for Scientific Computing, publishes to RTD
AllenNeuralDynamics/aind-software-docs’s past year of commit activity - dynamicrouting-extra-unit-metrics Public
A capsule for generating extra unit metrics for every unit in a datacube
AllenNeuralDynamics/dynamicrouting-extra-unit-metrics’s past year of commit activity - supervoxel-loss Public
Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
AllenNeuralDynamics/supervoxel-loss’s past year of commit activity - segmentation-skeleton-metrics Public
A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
AllenNeuralDynamics/segmentation-skeleton-metrics’s past year of commit activity - aind-data-transfer-service Public
FastAPI service to run data compression and transfer jobs on the hpc
AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity
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