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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 4

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 6

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 350 repositories
  • aind-qc-portal Public

    Quality control portal

    AllenNeuralDynamics/aind-qc-portal’s past year of commit activity
    Python 1 MIT 0 14 1 Updated Feb 26, 2025
  • AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 26, 2025
  • AllenNeuralDynamics/aind-eye-tracking-pipeline’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Feb 26, 2025
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 25 MIT 17 50 6 Updated Feb 26, 2025
  • aind-software-docs Public

    Centralized documentation repository for Scientific Computing, publishes to RTD

    AllenNeuralDynamics/aind-software-docs’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 26, 2025
  • dynamicrouting-extra-unit-metrics Public

    A capsule for generating extra unit metrics for every unit in a datacube

    AllenNeuralDynamics/dynamicrouting-extra-unit-metrics’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 26, 2025
  • supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    AllenNeuralDynamics/supervoxel-loss’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 26, 2025
  • segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    AllenNeuralDynamics/segmentation-skeleton-metrics’s past year of commit activity
    Python 6 MIT 0 1 0 Updated Feb 26, 2025
  • aind-data-transfer-service Public

    FastAPI service to run data compression and transfer jobs on the hpc

    AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity
    Python 3 MIT 0 15 (1 issue needs help) 1 Updated Feb 26, 2025
  • protocol Public Forked from harp-tech/protocol

    Description of the Harp protocol.

    AllenNeuralDynamics/protocol’s past year of commit activity
    0 MIT 6 0 0 Updated Feb 26, 2025